Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00413 ATGAGAGGCAGGCTCAACGCGGTGGTGGTCGCGGCTGCTGAGGAGCGCTGTTGGGTGGCGAATGAGGAGCGATGCTGGGTCGCGAATGAGGAGCGCTGCTGGAATCTGGAGCTTGGTGGGCGGTGGCAATGGTGGCCTTGGTGGATGAGAGGGGAAGAAGCTGGGAGCTTCGGGGGTTTGAAGAATCAACAGCAACAAGCAACAACAAAATTCAACAGGGATATGGAGGACAAAACATCGTCGTCGCCGTCAAACAGAACCACGTCGTTTCGGGGACACCCTAGCGGCACGCTCCAAGTGTTGTCCAACCCTTCTTCTTCTTCTTCGCCGCAAATCTCATCCGCTCCTTCAGAAGCGTCCATTCCGTCGGAGGCAGCGGCGCAGAGGGCGGCGGAGTGGGGGCTGGTGCTGGAGACGGACGAGGAGACAGGAAAGCCGCGGGGAGTGGCGCCTCGGACATCAGGCGGTGAGGTTGGCGGCGGAGCAAGTAGCAGCAGCAGTAGTAGTAGAGATGTGAGGGTGGCGCGTGGAGTGCCACGTGTATCGGAGGATGTTAGAGCTGCGCTGTCGACGTTTCAACAGACGTTCGTAGTTTCGGACGCCATGAAAGCAGATTATCCGATTCTGTATGCGAGTGCTGGATTCTTCAACATGACTGGTTACACCTCCAAAGAAGTCATTGGCAGAAACTGTCGGTTTTTACAGGGGAAAGATACAGATCCAGCTGACGTGGCAAAGATAAGGGAAGCTCTGAACATGGGGACAAGCTATTGTGGAAGGTTGCTTAACTACAAGAAAGATGGCACTCCCTTTTGGAACCTTCTCACTATTTCTCCAATCAAAGACCATGATGGAAATGTCCTCAAATTTATCGGAATGTTAGTGGAGGTTAGCAAGCACACAGAGGGGTCAAAGGAAAACATGTTACGCCCCAATGGACTCCCTGAATCATTGATTCGATATGCCGCTAGAGAGAAAGAGAAGGCAGGGAATTCAGCAAGAGAGTTAGTGGAAGCCATGAAGATGAAGATGAAGAGGCTCAGTGAATCAAACACAAACTCTAATGAGTCCAATAATAATAATAAGAAGAAGAACAAAGCAGCTCCTCCAAGATCAGCATTATTAAGGAGAAAATCAGATAGTAGCATCATTACTTCTTCTACACGTAAATCACTTTCAGAACATTCTAGAAGCAACTCAATGCTCTCTCGCGTTCCTCCTCTTCCTCCTAACAACAACAAACATACTAAGATTAGCTCCCGCCGTCGCCTTTCTTTCATGGGGTTGATTAGGAAAAGTATGTCGAACTATGAAGCTGACGAGGACAGTGTTGAGAGTGACGAGGAGAATGATAATGATAACGAAGAAGGAGATTATGACGAGTGTAATGTGAGGGAAAAGAGAAAGGGCTTTGATCTTGCTACCACACTCGAACGCATTGAAAAGAACTTCGTCATTACTGATCCAAGGCTACCCGATAACCCTATAATCTTTGCATCTGATAGCTTCTTGGAACTTACAGAGTATAGTAGAGAAGAGATCTTGGGAAGAAATTGCAGATTTCTGCAAGGACCTGAAACTGATCGAGCTACAGTGAGAAAAATTAGAGAGGCCATTGACAACCAAATAGAAATTACTGTGCAGCTCATTAATTATACAAAGAGTGGTAAGAAGTTTTGGAATTTGTTTCATTTGCAACCTATGCGAGATCAGAAGGGAGAAGTACAGTATTTTATTGGTGTTCAACTTGATGGTAGCCAACATTTGGAGCCTCTTCACAACTGCATTGCAGATGATACTGCCAAAGAGGGACAATTATTGGTAAAACAAACTGCTGAAAATGTTGATGATGCTGTTAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAACCATTCAAAAGTTGTTCACCCTAAACCTCATAGAAAAGATGCTGCTGCTTGGGCAGCTATTCAAAAGATCCTGGATAGTGGAGAACAGATAGAGTTGAAGCATTTTAAGCCAGTAAAGCCTTTGGGAGCAGGAGATACTGGCAGTGTGTATTTGGTGGAGCTATGTGGAAGTGGACAATACTTTGCAATGAAGGCAATGCAGAAAGATGTGATGATGAATCGAAACAAGGTGCATAGAGCTTCCACTGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACTCAAACCCATGTTTGTTTGATAACTGATTACTGCCCTGGTGGTGAATTATTCCTACTTCTTGATCGCCAGCCATCTAAGGTTCTCAAGGAAGATGCTGTCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTACCTTCATTGTCAAGGAATAATTTACCGAGATTTGAAGCCAGAGAATGTGTTACTTCAGAGCAATGGACATGTTTCTCTAACAGATTTTGATTTATCATGTTTAACATCCAGCAAACCACAGCTTATAACTCCAACTACAAATGAAAAGAAGAAACATCAAAAAGGTCCAGAAATTCCAATATTTTTGGCAGAACCTATAAGAGAATCAAATTCTTTTGTTGGCACAGAAGAGTATATAGCTCCGGAAATTGTAACTGGTGCAGGAATTCTTTTATATGAAATGCTTTATGGATTTACGCCATTCAGAGGAAAGAATAGGCAAAAAACATTTACAAATATTCTCAATAAGGATCTTAAGTTTCCCAAAAGTAAACAGGTAAGTCTGCATGCAAAGCATTTAATATATGGATTGTTACAAAAAGATCCAAAAAGCAGAATGGGTTCACAAGGAGGAGCTAATGAAATTAAGACACACTCATTCTTTCGTGGTGTCAATTGGGCCCTCGTCAGATGCATGAATCCTCCTACACTTGATGCTCCTCTATTTGAGAAAACTGAGGAAGAAGAAGAAGAGCAAGTAAAAGATGTAAATTCAGACATAGAAGAAATAAATATCTTTTAG 2976 0.4368 MRGRLNAVVVAAAEERCWVANEERCWVANEERCWNLELGGRWQWWPWWMRGEEAGSFGGLKNQQQQATTKFNRDMEDKTSSSPSNRTTSFRGHPSGTLQVLSNPSSSSSPQISSAPSEASIPSEAAAQRAAEWGLVLETDEETGKPRGVAPRTSGGEVGGGASSSSSSSRDVRVARGVPRVSEDVRAALSTFQQTFVVSDAMKADYPILYASAGFFNMTGYTSKEVIGRNCRFLQGKDTDPADVAKIREALNMGTSYCGRLLNYKKDGTPFWNLLTISPIKDHDGNVLKFIGMLVEVSKHTEGSKENMLRPNGLPESLIRYAAREKEKAGNSARELVEAMKMKMKRLSESNTNSNESNNNNKKKNKAAPPRSALLRRKSDSSIITSSTRKSLSEHSRSNSMLSRVPPLPPNNNKHTKISSRRRLSFMGLIRKSMSNYEADEDSVESDEENDNDNEEGDYDECNVREKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVRKIREAIDNQIEITVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHLEPLHNCIADDTAKEGQLLVKQTAENVDDAVRELPDANMKPEDLWMNHSKVVHPKPHRKDAAAWAAIQKILDSGEQIELKHFKPVKPLGAGDTGSVYLVELCGSGQYFAMKAMQKDVMMNRNKVHRASTEREILDMLDHPFLPALYASFQTQTHVCLITDYCPGGELFLLLDRQPSKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVSLTDFDLSCLTSSKPQLITPTTNEKKKHQKGPEIPIFLAEPIRESNSFVGTEEYIAPEIVTGAGILLYEMLYGFTPFRGKNRQKTFTNILNKDLKFPKSKQVSLHAKHLIYGLLQKDPKSRMGSQGGANEIKTHSFFRGVNWALVRCMNPPTLDAPLFEKTEEEEEEQVKDVNSDIEEINIF 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00413 991 Gene3D PAS domain 195 363 - -
Aip03g00413 991 SUPERFAMILY PYP-like sensor domain (PAS domain) 485 584 IPR035965 -
Aip03g00413 991 CDD PAS 484 584 IPR000014 -
Aip03g00413 991 ProSiteProfiles PAC domain profile. 255 309 IPR000700 -
Aip03g00413 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Aip03g00413 991 SMART serkin_6 670 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00413 991 PANTHER PHOTOTROPIN-1 146 984 - -
Aip03g00413 991 SUPERFAMILY PYP-like sensor domain (PAS domain) 204 294 IPR035965 -
Aip03g00413 991 Gene3D Transferase(Phosphotransferase) domain 1 754 960 - -
Aip03g00413 991 ProSiteProfiles PAC domain profile. 543 597 IPR000700 -
Aip03g00413 991 ProSitePatterns Protein kinases ATP-binding region signature. 676 699 IPR017441 GO:0005524
Aip03g00413 991 ProSiteProfiles PAS repeat profile. 181 254 IPR000014 -
Aip03g00413 991 MobiDBLite consensus disorder prediction 347 366 - -
Aip03g00413 991 SUPERFAMILY Protein kinase-like (PK-like) 656 966 IPR011009 -
Aip03g00413 991 ProSiteProfiles PAS repeat profile. 473 542 IPR000014 -
Aip03g00413 991 MobiDBLite consensus disorder prediction 56 125 - -
Aip03g00413 991 MobiDBLite consensus disorder prediction 378 415 - -
Aip03g00413 991 MobiDBLite consensus disorder prediction 158 172 - -
Aip03g00413 991 SMART pac_2 258 300 IPR001610 -
Aip03g00413 991 SMART pac_2 546 588 IPR001610 -
Aip03g00413 991 CDD STKc_phototropin_like 668 965 - -
Aip03g00413 991 MobiDBLite consensus disorder prediction 137 173 - -
Aip03g00413 991 Pfam Protein kinase domain 672 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00413 991 TIGRFAM sensory_box: PAS domain S-box protein 207 302 IPR000014 -
Aip03g00413 991 TIGRFAM sensory_box: PAS domain S-box protein 494 584 IPR000014 -
Aip03g00413 991 CDD PAS 208 297 IPR000014 -
Aip03g00413 991 MobiDBLite consensus disorder prediction 81 121 - -
Aip03g00413 991 PANTHER FLIPPASE KINASE 1-RELATED 146 984 - -
Aip03g00413 991 ProSiteProfiles Protein kinase domain profile. 670 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00413 991 Gene3D PAS domain 459 622 - -
Aip03g00413 991 MobiDBLite consensus disorder prediction 440 459 - -
Aip03g00413 991 MobiDBLite consensus disorder prediction 347 420 - -
Aip03g00413 991 Gene3D Phosphorylase Kinase; domain 1 669 753 - -
Aip03g00413 991 Pfam PAS domain 204 298 IPR000014 -
Aip03g00413 991 Pfam PAS domain 492 584 IPR000014 -
Aip03g00413 991 MobiDBLite consensus disorder prediction 435 461 - -
Aip03g00413 991 SMART pas_2 471 540 IPR000014 -
Aip03g00413 991 SMART pas_2 183 252 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00413 Aip-Chr3 4014599 4025211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00413 125 991 AGC Kinase Gene Family AT3G45780 65.854 0.0 1154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aip03g00413 Pkinase 7.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00413 K20715 - gmx:100804524 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00413 03 4014599 4025211 Aip03g00413 03 4014599 4025211 ECH
Aip08g00468 08 3628695 3639534 Aip03g00413 03 4014599 4025211 PCT