Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00410 ATGAGCAATAATGTTGGGAAAAGAGGTCTGGCAGAACAAAATCATAAGTTTTTTGACAATAAGAGGCTCAATAATGGAGTAGTTAATGGAGAGCTGGGTTCTGGGTCATCAAATGATGATAACACAAGATTTAACAGACAAACCAGGGATGGAAACAATGGGTTGCGGGGACAAATTCAAGTCCATGACAGCATGCAGATTTCGCAACAACCACCTCAAGGACCAGTTATATGCTGGGAGAGATTTCTCCCTATAAGATCCATAAAAGTTCTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTCCGAGCTCTTTTACGAAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGAAAATCCTAGAAGATCCAGGAAATCACATTGATCTTGTCCTTACAGAGGTAGCTATACCGATTTTATCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACACTGAAAAATATTCCTGTGATTATGATGTCATCTCAAGATTCTATGGGCATAGCGTTTAAGTGTTTGTCAAAAGGTGCAGTTGACTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAGAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGCGAAAGTGGGACACATAACAGAAAATCTGCCAAGACAAGAAGTAACGATGCCTCAGAAAATAATACTGACAGCAGTGATGAGAATGATTGTGGAAGTAGAGGCTTGACTGTTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAGTGTCTAGTTCAAGTTGGCAGTTCTTATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCATGTGTGCCGAAGTGATGCATACAAAGCCTGAAAAAGCTAGTAGTAGGTGGATGCATGCAACAGAAAAAGAGTGCCATGAACTGGTTGACCATTTTGATAATGTTGCAATGGGTAAAGATTTAGCTATGGGAATAACTTTGAATGTGCAACTAGAGCATGCACCCAAGGAGTTGTCTAGCAATCCTTCGGGTAAAGGGATAGATATTATGTCTGATGTAGATGGTAAGCAACTCAACAAGGGACATATTAATGTCTGTGAAAAAGGACAACTGGATTTCAACAGCGATAAAAACAGGCCTCGGGAAAATCAGGCTATGAATGTTGTTGATGTTACTGATAGCAGCAGTCCACAGGCTGAAAGCAGAGACTTGAATACTCCAAATGGATTTTCTGGTTTCTCACAAACTAAAGCAAGTTGTTCCTTTAAACAGCATCCTTCCCTTGAACTGACTTTGAAAAGACTTGGAGAAGCAAGAGATGCTAAAATTGTCACAAGTGATGAATGCAATATTTTGAGACATTCAGATCTGTCGGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACTGGAAATGTTGGAAGCTGTTCACCACTTGACAATAGCTTAGCTGCACCAAATGCAGAGACATTACACAACTTCCCATCTCATTCAAACAGCACTCCTCCAAATCAGCAGTCTAATGGGAGCAACAACACCAATGACATGGCCTCCACTAATGCATGTCTTGGGACCAAACCTGAAACTTTGGACAAAAAGCCAGAATCTGCAAGAGGGATTGGCTCTTTTAATTCTTCCGCATTGCAAACTGTGCAGCACAATAGTATCACTTCATCTCAAAAGAAAATTTCTGCCCAAGGAGAATATGCAGAAATTGTTAAAGGACAAGTGGAATGCTCTGAACAAGGATTACAACTCCAGCAAAATCACTATCAAATTCATCATTACAATCACATCGCTCACAAAGCTGCTCTAGATCTCCGGTCAGGTCACGATGATCCCTCGATGAAAGGCTCCTCCAAGGCTGCCCAGCAATGTGTATCATCAAATGTCTTTGGTGGGCCAGCAGAAAGTAATGCTGCAAATTTCGGCATAGATGGAAATGCTGCTGAGAGTGATCATGGGAGCAATGGACAGGATGCATGCAGTAACACCTTGACAGTTAGAACTATGAATGTGGAAAACGGTAATGTAGCAAGTGGGAGCAATGGAGGAGGTTGCAATGATAGGAAAAACATTGGGAATGGTGCAGATGAAGAAAGAATGGCATTGAGAGAGGCTGCCTTGACAAAATTTCGTCAGAAGAGAAAAGAAAGATGCTTTGAGAAGAAGGTTCGATACCACAGCCGGAAAAAGCTAGCCGAACAGCGGCCACGAATCCGTGGACAATTTGTTCGACGGATAGCGTCTGACCCCAAAGAAGAAAAAGATATACAAAGCCACAACATGGATTCAAGCGATGCTCTCCAATGA 2367 0.4191 MSNNVGKRGLAEQNHKFFDNKRLNNGVVNGELGSGSSNDDNTRFNRQTRDGNNGLRGQIQVHDSMQISQQPPQGPVICWERFLPIRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKILEDPGNHIDLVLTEVAIPILSGIGLLCKIMNHKTLKNIPVIMMSSQDSMGIAFKCLSKGAVDFLVKPIRRNELRNLWQHVWRRCHSSSGSGSESGTHNRKSAKTRSNDASENNTDSSDENDCGSRGLTVRDGSDNGSGTQSSWTKCLVQVGSSYPVSPHKQLVDAPDSMCAEVMHTKPEKASSRWMHATEKECHELVDHFDNVAMGKDLAMGITLNVQLEHAPKELSSNPSGKGIDIMSDVDGKQLNKGHINVCEKGQLDFNSDKNRPRENQAMNVVDVTDSSSPQAESRDLNTPNGFSGFSQTKASCSFKQHPSLELTLKRLGEARDAKIVTSDECNILRHSDLSAFSKYNTASSANQAQTGNVGSCSPLDNSLAAPNAETLHNFPSHSNSTPPNQQSNGSNNTNDMASTNACLGTKPETLDKKPESARGIGSFNSSALQTVQHNSITSSQKKISAQGEYAEIVKGQVECSEQGLQLQQNHYQIHHYNHIAHKAALDLRSGHDDPSMKGSSKAAQQCVSSNVFGGPAESNAANFGIDGNAAESDHGSNGQDACSNTLTVRTMNVENGNVASGSNGGGCNDRKNIGNGADEERMALREAALTKFRQKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVRRIASDPKEEKDIQSHNMDSSDALQ 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00410 788 MobiDBLite consensus disorder prediction 233 249 - -
Aip03g00410 788 MobiDBLite consensus disorder prediction 507 543 - -
Aip03g00410 788 Pfam CCT motif 723 764 IPR010402 GO:0005515
Aip03g00410 788 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 757 IPR045279 GO:0009736
Aip03g00410 788 MobiDBLite consensus disorder prediction 661 680 - -
Aip03g00410 788 Pfam Response regulator receiver domain 90 201 IPR001789 GO:0000160
Aip03g00410 788 SMART REC_2 88 203 IPR001789 GO:0000160
Aip03g00410 788 MobiDBLite consensus disorder prediction 693 712 - -
Aip03g00410 788 MobiDBLite consensus disorder prediction 211 267 - -
Aip03g00410 788 Gene3D - 87 257 - -
Aip03g00410 788 MobiDBLite consensus disorder prediction 693 707 - -
Aip03g00410 788 SUPERFAMILY CheY-like 86 212 IPR011006 -
Aip03g00410 788 MobiDBLite consensus disorder prediction 385 424 - -
Aip03g00410 788 MobiDBLite consensus disorder prediction 754 780 - -
Aip03g00410 788 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 30 757 - -
Aip03g00410 788 MobiDBLite consensus disorder prediction 750 788 - -
Aip03g00410 788 MobiDBLite consensus disorder prediction 28 55 - -
Aip03g00410 788 ProSiteProfiles CCT domain profile. 723 765 IPR010402 GO:0005515
Aip03g00410 788 CDD psREC_PRR 90 193 - -
Aip03g00410 788 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
Aip03g00410 788 MobiDBLite consensus disorder prediction 394 424 - -
Aip03g00410 788 MobiDBLite consensus disorder prediction 507 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00410 Aip-Chr3 3986157 3992544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00410 35 293 Response Regulator Gene Family AT5G60100 62.264 1.73e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Aip03g00410 Response_reg 1.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00410 K12129 - gmx:100785796 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00410 03 3986157 3992544 Aip03g00410 03 3986157 3992544 ECH