Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00405 ATGTTCGATCTTAATCTAAATGCGGATTGCGACGATTCGACTCAGAACGGTGACTCGGCAGTTGTGATGCTGTGCGAGAAGCTTCCAGAAGGTTCCTGGAACCAAATGACGGAGTCGGCCGGGACATCGAACTCCTCCGTCGTCAATGCCGACGGTTCGAGCAACAACGACGACTCGTCGTGCTCTACGCGCGTCACCGACAACGCGCTCACTTTCAATTTCGGAATCCTGAAAGCGGACGACAACGGCGTCGTGACGAAGGAGCTGTTTCCGGTGAACGGAGGAGCGAACTTCGTTGATTCCGTGAACTGGCAGAAGAGTAAGTTTCAAGGAACGAACGGCTCGATTGATCTCTCGTTCAATCGGCAGGGAGTGGTGGACGGTGAGGTAAAGGTGGTTCAGGTTCAACAACCGGCGAAGAAGAGTAGAAGAGGACCAAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACCTTCTATAGAAGAACAGGACGATGGGAATCGCATATCTGGGATTGCGGTAAACAAGTTTATTTGGGCGGATTCGACACTGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGAAGCTGATATCAATTTCAATCTGAGTGATTACGAGGACGATCTTAAACAGACGAAGAATCTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAAAGCACTGGTTTCTCAAGGGGGAGTTCAAAGTACCGAGGAGTGACACTCCACAAGTGTGGCCGTTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCTGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTACATATGAAGGAGAGATGAAATCTCCAGCCATCAATGAAGGTGGCAGTCCTAATCTTGAACTTAATTTGGGCATATCAACTCCAGGACATGGTCTGAAAGAAAACAGGGGGCAACTCCAGTTCCCCTGGGTCCCTTACAGCATGCATGCTGGAAGAACAATGGTGGAAACCAATGTTAATTCAGTAATTGGTAATCCATCTTCAGAAAGGCTGGTTGCAACTGAAGAGCATCCTTCTCTGTGGAATGGCGTGAATCCTAGTTTCTTTCCCAATCAGGAGAGAGCTGATAGGATCAGCATAGATCATTCCAAAGGACTCCCCGGTTGGCCATGGCAAATGCACAACCAAATCACTGCTACCCCAGTGCCTCCTTTCTCTGTTGCAGCATCATCAGGATTCTCCATCTCAGCTACATTTCCATCTAACGCCATCTTTCCGGCAAAATCCATGAACTCAACTCCCCAAAGTCTTTGTTTTCCTTCATCTGCCGCTCCTATCAGCACTGCAACTCAATATTACTACCAGGCTAAGCCCCGGCAGGCACCACCCTAG 1416 0.4929 MFDLNLNADCDDSTQNGDSAVVMLCEKLPEGSWNQMTESAGTSNSSVVNADGSSNNDDSSCSTRVTDNALTFNFGILKADDNGVVTKELFPVNGGANFVDSVNWQKSKFQGTNGSIDLSFNRQGVVDGEVKVVQVQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGEMKSPAINEGGSPNLELNLGISTPGHGLKENRGQLQFPWVPYSMHAGRTMVETNVNSVIGNPSSERLVATEEHPSLWNGVNPSFFPNQERADRISIDHSKGLPGWPWQMHNQITATPVPPFSVAASSGFSISATFPSNAIFPAKSMNSTPQSLCFPSSAAPISTATQYYYQAKPRQAPP 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00405 471 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Aip03g00405 471 CDD AP2 152 210 IPR001471 GO:0003700|GO:0006355
Aip03g00405 471 Gene3D AP2/ERF domain 151 209 IPR036955 GO:0003700|GO:0006355
Aip03g00405 471 Gene3D AP2/ERF domain 243 287 IPR036955 GO:0003700|GO:0006355
Aip03g00405 471 MobiDBLite consensus disorder prediction 34 62 - -
Aip03g00405 471 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 441 - -
Aip03g00405 471 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 441 - -
Aip03g00405 471 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Aip03g00405 471 CDD AP2 243 288 IPR001471 GO:0003700|GO:0006355
Aip03g00405 471 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Aip03g00405 471 SMART rav1_2 244 292 IPR001471 GO:0003700|GO:0006355
Aip03g00405 471 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Aip03g00405 471 SUPERFAMILY DNA-binding domain 243 287 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00405 Aip-Chr3 3936310 3940238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00405 1 428 AP2-EREBP Transcription Factor Family AT5G60120 45.770 4.72e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g00405 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00405 K09284 - gmx:100788303 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00405 03 3936310 3940238 Aip03g00405 03 3936310 3940238 ECH
Aip08g00476 08 3739421 3745279 Aip03g00405 03 3936310 3940238 ECH
Aip08g00476 08 3739421 3745279 Aip03g00405 03 3936310 3940238 PCT