Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00393 ATGGAGGGAAGTGACACTAACAACAACACCTACTCTAACTCTACTTCTACTTCTTCTGGTTATCCTCCTCCTCCTGCGGCGACGGTGGCGGTTGTTATGAGCCCTTGTGCAGCATGCAAGATCTTGAGGCGAAGATGCACCGAGAAATGCATGCTTGCGCCATATTTCCCTCCCACTGAGCCTACCAAGTTCACCATTGCTCATAGGGTCTTTGGCGCTAGCAACATCATCAAGTTCTTGCAGGACCTTCCGGAATCTCAAAGAGCTGATGCAGTGAGTAGCATGGTGTATGAGGCAAGTGCAAGAATAAGGGACCCAGTTTATGGTAGTGCAGGTGCAATTTGCCACCTTCAGAAGCAAGTCAATGAACTTAGAGCACAATTGGCAAAAGCACAAGCTGAGGTTGCAACCATGCAATTTCAACAAGCCAACCTTGTTGCCCTAATTTACATGGAAATGGCACAACAAAAAAGCTCCCAACAACAAGAATTTGAATCATCACCTCAGCAATCATCAATGGAGGATTTCAGTGTTCCAAGTCCTCACTATCAACAAAGTAACATCAACTACTTTGAGGATACCCCTAGCCTCAATTCATTGTGGGAGCCGCTCTGGACGTGA 621 0.4654 MEGSDTNNNTYSNSTSTSSGYPPPPAATVAVVMSPCAACKILRRRCTEKCMLAPYFPPTEPTKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGSAGAICHLQKQVNELRAQLAKAQAEVATMQFQQANLVALIYMEMAQQKSSQQQEFESSPQQSSMEDFSVPSPHYQQSNINYFEDTPSLNSLWEPLWT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00393 206 MobiDBLite consensus disorder prediction 159 178 - -
Aip03g00393 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 16 203 - -
Aip03g00393 206 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g00393 206 Coils Coil 114 141 - -
Aip03g00393 206 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Aip03g00393 206 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Aip03g00393 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00393 Aip-Chr3 3750519 3752332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00393 31 206 AS2 family AT1G07900 61.453 3.12e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip03g00393 LOB 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00393 - - gmx:100819336 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00393 03 3750519 3752332 Aip03g00393 03 3750519 3752332 ECH
Aip08g00490 08 3880830 3904159 Aip03g00393 03 3750519 3752332 ECH
Aip08g00490 08 3880830 3904159 Aip03g00393 03 3750519 3752332 PCT