Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00392 ATGGACTCCGACGACGACCTCCACCGCCTCTTATCGGAGCAACGCCGTGAGCTCGCCACGGCTGAGGCCATCGACTCCGATCTCGAATTCGCATACCGACTACAGCTTGAGGAAGCTCTCGCCGCCTCCCTCGCTTCCCTCTCCTCCTCTTCCTCCCCGCAACCACCACCACCACCACCAACCAACGATGACAAAAACGACCCTGTTTTGAACGCCACAACACTCCAGGCGCAAGAACTCGCGAGGGTTGAGCAAGAACTTCGCGACCGCCACCTCAGCGAGGCTGAGGCCCGCAAAACGAGTCTCGATCTCAACCGTCGCGTCCACGATCAGAAAGTCGCCATCGAAATTCTTAGAATCCCCGAAGATGATTGGGTCGAGTGGGGCGATAACTTCCAGAAACCCTTCTTCTTCGGGGAGGGTTCTTCTTCTTCTTCTTCGTCGACGAAGAAGAATAATACTCGGAAGGGCAATTTGGAAATGGACGAAGACGATGATGGTGCGGTTTTTAGGGTTTACTTTAAGGGTTTGGTGAGCAATGACGAGAAGTTGAAGAACGGAGAGAAGGTTCTGTTGGCTGGGATTGGGGTTGCGATTTGTGATCCTGAAGATAACTTGATTCTTGAGGTGCGAAAGCCACTCATTGGGTGTGGAACGAGCAAGATTGCTGCTGATCTTAAGGCTTTGATCGAAGGCTTGAATGCTGCGTTCGCTTTGGACTTGAAGCGTGTTCGGTTCTTCTGCGATTACTATCCAATTTTCCAATTCGTTAGGGGAAGATGGCCTGTGAAACAGCGGAAGGTTGCTGTGCTAGTCAATCAGGTGAATCTGCTACGGAGAAAATTTACTTACTGTGCTCCAATGCTTCTAGCAAGACATGATGTCAAGTATGCATTTAAGCTTGCAAGAGATGCAATCGTTTCTCAATTGACAGCGCCTGCGGACTCTAACGGTATGAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACCGATGGCAATAACTTTTTTTCGGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAGACAACATGTGGAGGTGAAGTTGCTTCATGGGATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCCGAGCTTCAAGTTGACAGCTGCAAGAAATTCTTGACAAATAAATTAATTGAGACCATGCAACTGCGAAAGTTGGAAGCTTCAATTCCAGTTACTGAGAAAGTTTATTGTCCCTATCCACGATGCTCTGCTTTGATGTCAAAAACTGAGCTTTTTGAGTACTCCAAAAATCTTATTGGTGATTTTGAACAATCAGGTTTCTGGCATCCAGGAGTCTATGGCGCCAGTGCGTGA 1359 0.4805 MDSDDDLHRLLSEQRRELATAEAIDSDLEFAYRLQLEEALAASLASLSSSSSPQPPPPPPTNDDKNDPVLNATTLQAQELARVEQELRDRHLSEAEARKTSLDLNRRVHDQKVAIEILRIPEDDWVEWGDNFQKPFFFGEGSSSSSSSTKKNNTRKGNLEMDEDDDGAVFRVYFKGLVSNDEKLKNGEKVLLAGIGVAICDPEDNLILEVRKPLIGCGTSKIAADLKALIEGLNAAFALDLKRVRFFCDYYPIFQFVRGRWPVKQRKVAVLVNQVNLLRRKFTYCAPMLLARHDVKYAFKLARDAIVSQLTAPADSNGMKNLNETCVICLEDTDGNNFFSVDGCQHRYCFSCMRQHVEVKLLHGMVPKCPHEGCNSELQVDSCKKFLTNKLIETMQLRKLEASIPVTEKVYCPYPRCSALMSKTELFEYSKNLIGDFEQSGFWHPGVYGASA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00392 452 Gene3D - 170 312 IPR036397 GO:0003676
Aip03g00392 452 ProSiteProfiles TRIAD supradomain profile. 322 452 IPR044066 -
Aip03g00392 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 405 IPR013083 -
Aip03g00392 452 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 430 - -
Aip03g00392 452 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 430 IPR031127 GO:0004842|GO:0016567
Aip03g00392 452 Pfam Reverse transcriptase-like 192 305 IPR002156 GO:0003676|GO:0004523
Aip03g00392 452 MobiDBLite consensus disorder prediction 43 69 - -
Aip03g00392 452 MobiDBLite consensus disorder prediction 139 160 - -
Aip03g00392 452 MobiDBLite consensus disorder prediction 139 154 - -
Aip03g00392 452 ProSitePatterns Zinc finger RING-type signature. 344 353 IPR017907 -
Aip03g00392 452 ProSiteProfiles Zinc finger RING-type profile. 326 370 IPR001841 -
Aip03g00392 452 SUPERFAMILY RING/U-box 324 405 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00392 169 432 C3H Transcription Factor Family AT2G19610 36.296 1.45e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00392 - - ahf:112736554 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00392 03 3737282 3739380 Aip03g00392 03 3737282 3739380 ECH