Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00378 ATGGACATTGATCTGAACCATGCAGTAGTAGTGAGTAGTGAGGATGATGATGAGAGCAATGTGGAATGTGACAAAGCTGCTTCATCACCTTCTCCTTCAGGTTCTGCTATGTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGACCTCTAACTTCACTCCCAAAGAAAGGGAATGTGATTGTGTACTTCCCTCAAGGACACTTAGAACAAGCCTCTTCTTTCTCTCATTTCGCACCAATTGATGTGCCTAATTATGATCTTCAGCCTCAAATCCTTTGCAGGGTTGTTAATGTTCAGTTACTTGCTAATAAGGAGAATGATGAGGTTTATACTCAGATTACTTTGCTTCCCCAATCTGATGAGTTGGAAGATAAGAATTTGGAGGGTAAAGAGGTTGAGGAAATTGGAGGAGATGAAGAGGGAAATGGAGTTCCACCTTTAAAGCCAACAACTCACATGTTCTGCAAATCACTCACTGCTTCAGATACCAGCACTCATGGAGGATTCTCTGTTCCTCGCCGAGCTGCCGAAGATTGTTTTCCTCCTTTGGATTATAAACAACAAAGACCCTCTCAAGAGCTTGTAGCAAAAGACCTTCATGGTGTGGAGTGGAAATTTCGCCATATTTATAGAGGGCAACCAAGGAGGCATTTACTCACTACTGGTTGGAGTATGTTTGTTGGTCAAAAGAAACTTGTTTCTGGTGATGCAGTCCTCTTTCTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTATTAGACCAATAAATGGTCTTCCTGGAACAGTAATTGGAAACCAAAACTGTTATCCCAATTTTCTTTCTTCTGTTTCTGATGCAATATCCACCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCACCCTTTGTTGTGCCATATCAAAAATATGTTAAAAGCATCAACAATCCTGTGACAATTGGGACAAGATTCAAAATGACTTTTGAAATGGATGAATCTCCAGAAAGAAGGTGTGGTGGTGGTACTGTGATTGGAATGAGTGAAGTAGATCCATATAGATGGCCTAAATCAAAGTGGAGATGCTTGATGGTTAGATGGGATGAGGATATTGATACTAATCATCAAGATCGAGTATCTCCATGGGAGATCGATCCTTTCGCTTCCCTCCCTCCTTTGAGTCTTCAGTCTTCCCCAAGACTGAAGAAACTAAGGACGGATGGGCAAGCTGCCGCTCACAGTCACCTCATCACTGCAGGGAGCAGTGGATTGGTGGACTTTGAGGAGTCTGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTCTGTCACTCTATTATGGATGTGACACCTTAACTAACCGGCCGCGATTCGAGATGAGCCCTCTTCCACATGTAGCATCAACAACTGGAGTGAGAAGGGGCAACACTGCTGAGCTTATGAGTGTTCATCCATTCAGCTATGCAGGCTTCACAGAAACTACTAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATAGGTCCATTGAAATCCCTTAGGGGAAAAGTTGATTTGAGCCTTGGTTCTTGGGGCAAATCCAACAATAGTATTGGTTGCACCACTTTCAACTTTCATCAAGCAACCAAACCACAAGTTCTTGAATCTTATTTTCCCTATGGGGATATTCACAACAAAACTGCTCAAACCAACATGTTTTACTCGAAACCGACGAATTTCCACAGAGAGAATGTCTCCTTCAACACACATTCCAATCAAGGGGTGATCAAGAGAAGTGAAGTTGGAAGAACAGATGTTCCAAATGAGCATAAGAAGACAATGCCGGGCGAAACTTGTGCGCCGGATATGAAGATTCCAGATGACAGCAAAAATGTTAAGGCAAAGGTAAATGGCTGCAAACTATTTGGATTTCCTTTGTCTGGGGAAACTACCCCTCAAAATTTACAGAACACTGCTAAAAGGAGTTGCACTAAGGTTCACAAGCAAGGAAGCCTAGTAGGAAGAGCCATTGATCTATCAAGATTGAGCAGCTATGCTGACCTGCTGAGTGAACTCGAGAGACTTTTCGGCATGGAAGGCCTTCTTAGAGATCCTGATAAGGGATGGAGGATCCTCTACACTGATAATGAGAATGATATAATGGTTGTTGGGGATGATCCATGGCATGAGTTTTGCAATGTGGTGTGCAAGATCCATATATATTCCCAAGAAGAAGTGGAGAAGATGACAATTGGGATAATCAATGATGACACCAATAGCAGTTTGGAAGAGGCACCAATGATTATGGAGCCTTCAAAGTCCTCCTCAGTGGGTCAACCAGATTATTATTCTCCAACAGTTCTAAAAGTCTAA 2358 0.4249 MDIDLNHAVVVSSEDDDESNVECDKAASSPSPSGSAMSSYLELWHACAGPLTSLPKKGNVIVYFPQGHLEQASSFSHFAPIDVPNYDLQPQILCRVVNVQLLANKENDEVYTQITLLPQSDELEDKNLEGKEVEEIGGDEEGNGVPPLKPTTHMFCKSLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSMFVGQKKLVSGDAVLFLRGENGELRLGIRRAIRPINGLPGTVIGNQNCYPNFLSSVSDAISTKSMFHVFYSPRASHAPFVVPYQKYVKSINNPVTIGTRFKMTFEMDESPERRCGGGTVIGMSEVDPYRWPKSKWRCLMVRWDEDIDTNHQDRVSPWEIDPFASLPPLSLQSSPRLKKLRTDGQAAAHSHLITAGSSGLVDFEESVRSPKVLQGQENAGFLSLYYGCDTLTNRPRFEMSPLPHVASTTGVRRGNTAELMSVHPFSYAGFTETTRFPRVLQGQEIGPLKSLRGKVDLSLGSWGKSNNSIGCTTFNFHQATKPQVLESYFPYGDIHNKTAQTNMFYSKPTNFHRENVSFNTHSNQGVIKRSEVGRTDVPNEHKKTMPGETCAPDMKIPDDSKNVKAKVNGCKLFGFPLSGETTPQNLQNTAKRSCTKVHKQGSLVGRAIDLSRLSSYADLLSELERLFGMEGLLRDPDKGWRILYTDNENDIMVVGDDPWHEFCNVVCKIHIYSQEEVEKMTIGIINDDTNSSLEEAPMIMEPSKSSSVGQPDYYSPTVLKV 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00378 785 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Aip03g00378 785 SMART B3_2 155 257 IPR003340 GO:0003677
Aip03g00378 785 SUPERFAMILY DNA-binding pseudobarrel domain 148 267 IPR015300 -
Aip03g00378 785 PANTHER AUXIN RESPONSE FACTOR 20 772 - -
Aip03g00378 785 ProSiteProfiles PB1 domain profile. 656 738 IPR000270 GO:0005515
Aip03g00378 785 Gene3D - 319 391 - -
Aip03g00378 785 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Aip03g00378 785 Pfam Auxin response factor 282 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip03g00378 785 CDD B3_DNA 153 255 IPR003340 GO:0003677
Aip03g00378 785 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 772 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip03g00378 785 SUPERFAMILY CAD & PB1 domains 659 735 - -
Aip03g00378 785 MobiDBLite consensus disorder prediction 11 33 - -
Aip03g00378 785 Gene3D - 652 745 - -
Aip03g00378 785 Gene3D - 152 257 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00378 Aip-Chr3 3607104 3611920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00378 34 768 B3 DNA Binding Superfamily AT5G60450 57.951 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip03g00378 B3 9.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00378 - - gmx:100816621 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00378 03 3607104 3611920 Aip03g00378 03 3607104 3611920 ECH
Aip08g00495 08 3982272 3987107 Aip03g00378 03 3607104 3611920 PCT