Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00376 ATGATGTCTGAAGAACCCTTTTCTTCTGTTCTTCCTCCCAACACCACCATCACAAGCACCTTGGTTCATCTCCAAGACCCAACCTCAAACCCTAGTAGCAATAACTCAAAACCTAATTCAAATCAACCCACCAAGAAGAGGAGAAATCTTCCTGGAACACCAGATCCGGATGCAGAAGTGATAGCTATGTCACCAAAATCGTTGATGGCAACGAACCGTTTCGTATGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTGCATAGGAGAGGACACAACCTTCCATGGAAGCTAAAGCAGAGAAACAAAGAAGAACAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGTCTTGCGTGCACCATGACCCCTGTAGAGCACTGGGGGACCTCACAGGTATCAAGAAACACTACAGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCCGTTCATTCCGATTGGAAGGCCCATGCCAAGATCTGCGGGACTCGGGAGTACAAGTGCGACTGTGGCACCATTTTCTCCCGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTGGCTGAAGAAGGTGCAAGAATAAGCTCAGTTCCAACAACTTTGAGCAACTTGATGGGTAGAAGAGATCATAATCATCATCATCATCATCATCATCATCAATTAGCAACAAGTAGAATCATCCCTCGTCATCACATTCTTCCAAGTGCTGGATTTCACTCGGAATTTGGTGGTGGTGGTGGTGGTTATTATTCAGATCAGAAGCTGATGATGATGAGGAACAATAATATCAACAACAACAATAATATTCAGATTCCACTATGGCTAGACCAGGGCAATAGCAATAACAATCATAATCATGTTAGTGGCATTTCATCAAACACTAGTAGTGCATGCACCAATGGCAACACTATTATTATGCCTCATCATGATGTAGTGAACAACTCTATGTTTGGATCACAACAATGGCAGCAGAATCCAGAAGCATCATCATCATCACTCACAAACAATAACAACAATGCCAACGTGGCTATGATGATGCCACCACCACATGCAGGATTAAAGCAAGAACAAGATGACATGTTCTATTTTGGTGCTAGTAATTACCATCATCATCACCACATAATGTTACAAAAAGCATCACAAATTGGAGGAGGTGATGAGTTGGTGAATTTGGAAGGTAGCATCAGTAGTAGTAACATGATTATTCCTCCATTAATATTGAATCCAAGGAGGCCATCAAAGAATGATAATAAAGATGAAGATGATGAACTGGGTTTAACAAGGGATTTTCTTGGAGTTGGAGAAGATGAATCAACAATGAGCAACACTAGGCCATTGATGTTACAGCAACACCTAGCTGACTTCACAGCCATGGATATGCATCATCAAACCCACTACAGTAGTAGTAGTGGACATTACTGTTAG 1470 0.4272 MMSEEPFSSVLPPNTTITSTLVHLQDPTSNPSSNNSKPNSNQPTKKRRNLPGTPDPDAEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKEEQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVHSDWKAHAKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEEGARISSVPTTLSNLMGRRDHNHHHHHHHHQLATSRIIPRHHILPSAGFHSEFGGGGGGYYSDQKLMMMRNNNINNNNNIQIPLWLDQGNSNNNHNHVSGISSNTSSACTNGNTIIMPHHDVVNNSMFGSQQWQQNPEASSSSLTNNNNNANVAMMMPPPHAGLKQEQDDMFYFGASNYHHHHHIMLQKASQIGGGDELVNLEGSISSSNMIIPPLILNPRRPSKNDNKDEDDELGLTRDFLGVGEDESTMSNTRPLMLQQHLADFTAMDMHHQTHYSSSSGHYC 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00376 489 Gene3D Classic Zinc Finger 130 206 - -
Aip03g00376 489 SMART c2h2final6 151 171 IPR013087 -
Aip03g00376 489 SMART c2h2final6 74 96 IPR013087 -
Aip03g00376 489 SMART c2h2final6 116 146 IPR013087 -
Aip03g00376 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Aip03g00376 489 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Aip03g00376 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 459 - -
Aip03g00376 489 MobiDBLite consensus disorder prediction 1 59 - -
Aip03g00376 489 MobiDBLite consensus disorder prediction 8 48 - -
Aip03g00376 489 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Aip03g00376 489 Gene3D Classic Zinc Finger 53 126 - -
Aip03g00376 489 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 27 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00376 Aip-Chr3 3565550 3567689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00376 44 239 IDZ Gene Family AT3G45260 75.124 1.15e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00376 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00376 K25870 - ahf:112736536 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00376 03 3565550 3567689 Aip03g00376 03 3565550 3567689 ECH