Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00362 ATGGAGGAAACTAACACTGAACTCTCCCCTTCTAAAACCCTAAGCCCAACCAACGGTCAAGATTCCATCATCCAATCGAATCTAACGGCTACGAACGAACCTGAAACCCACACTGAAAATCAGATCCCTGAAGCTGAACATCAAAGCGACGTCGTTGCAGGGGAGAAACGCAAGAGGGACGACGACGAAGCTGGAGAAAGCGTTGACGGCGGCTCCGGCGCCAGCGGCGAAGATCGTTCGCTCCATCCGCTGTGGAAGACCAGCCTCTGTTCCTACTTCAGGCGCCATGGCAACTCCTGCAGCCACGGAACCGCGTGCCGCTTCGCGCACGGCGAGGAGGAGCTTCGCATTCGGCCTGACAACACGTGGGACCCGACGTCGGAGCGAGCGAAGAAGGCGCTGAAGTCCGAGAACGGCGAGAGGTGCGGCGTTTCCGAGGAAGTGATGATGACTGAGGCAGTCGTTGACGACGACGATGGTGGCGATGAAGAAAACGGCGGTTCCGGCGGATCCAACCACGCGCTTAGCAAGTGCTTGGTGCATTTGCCGAGGAAGTGGTGCTCTGATAATCTGAGGAGTTTTCTCAATGATGCGGGTATACGATTTAAGCATGCAAAGAAGAAGAAAGGCATGATGGTAGGTTTCGTTAGTTTTGAAGATGAAGAACAAATGCAGAGTTCATCAAAGGATCTAGAAGGAAAATCAATTGGGAATAAAAGGTTGAAGGTTGCAGATGTTATTCCTAGATCGTTTGAAAAGAACAGTAACTCCAACGCTGGTTCAGTTGCTACATTGAATGAGGAGAATGCGGGGGTCGATGTCGATCCAAATGTGACGGTGGAAGCTGGAGCTAACAGTGATAATTTGGCAGCCAATGGTTCATTGTCAAAGACAAAGAGTTTGCGAGATGTAGTGACTCCTCTAGCTCATATGGCTTATGCTGATCAGCTGGAGCAGAAAAAGAACTCTATCATGCAGATGCTCAAAAAACTTACTAGAAATGCTCGCAAAGCTTGTCCAAATGGTGTTTCTTTCCCTGACTGGATTGTCAAGTCTAGGGAAATAGGTGGTCTTCCGTGCAACCTAGAGGGTATTATTGCATCACCTATTGTAAATGGATATCGAAACAAGTGTGAATTTTCGGTTGGTTATTCTCTTGAAGGCAAAGTTACAGTTGGTTTCATGCTTGGAAACTTCAGGGAAGGTGTAACTGCAGTTGAAGAAGCAGTGGACTGCCCCAATGTTTCTACAATTGCTGGCAAATACGCTACTATCTTTCAGGAATTTCTGCAGCAATCTGATTTACCAGTCTGGAACAGATTTAAAAATTCCGGATTTTGGCGTCAATTGACGGTTCGAGAGGGGAGGACAAATGGGAATGTTGCTGATGCTGACAGTTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCTGGTTTTGATGACACAAAAGTATCTGGTGAATTTAAGAGGCTTGCTCAGGCATTTGCTGTGGGAGCTACTTCACATGGTCCAACGTTGCCTCTCACAGCTCTGGTTGTACAGGACCACCAAGGAATATCCAATGTAGCACCAGCTGATGCACCACTGCGTTTGCTTCCCATCCGTAAAACAGGTGACCTTGAGATGGATGAAAATGCAGATGCCATGGATGTAAGAATCCATGATTATATAAGCAATCTCCGTTTCTCTATATCTCCAACAGCATTTTTTCAGGTTAACAGTCTTGCAGCTGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGTTGTTTGATATATGCTGTGGGACAGGAACCATTGGTCTGACATTAGCACATCGAGTTGGTATGGTGGTTGGCATTGAAATGAATGCTTCTGCTGTAGCTGATGCTCATAGGAATGCTGAGATTAATGGCATAAAAAATTGCAAATTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTGTTGAAGGAATACCTAAATGTGCCTAAGGAACAAGTTGATGACCCTAAAATCGCTGAAAGTAGCAATGATATTTCTAAGTGTGGCGATCTCCAAGAGCCTGAGAATGGTGAAATGGCTTCTCAAAGTTCCGAAAATAGCAACGGAGAAGTTGGAAGTGAGGTTCAGAATTGTAGCGGTTCTGAAAACGGGAATACTTCTGCACAAAATAGCTCTGAAGGTGCTAATACTTCCGCACAACACTTTAAGAATGTGGTCGCTATTGTTGATCCTCCACGTGCAGGACTTCATCCCACTGTGCTTAAAGTTTTGAGAACTCATTCACGCCTCCGCAGGCTTGTTTACATATCCTGTAATCCTGAAACCTTGGTGGCAAATGCTATTGAGCTTTGCACTCCATCTCCCATAAAAATGGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCAAGGCATAGAGCCAAGTCCATGCCCATCTCAGAGGCCTTCCACCCTGTAAAAGCAATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTACTTGAGAGGTAA 2568 0.4599 MEETNTELSPSKTLSPTNGQDSIIQSNLTATNEPETHTENQIPEAEHQSDVVAGEKRKRDDDEAGESVDGGSGASGEDRSLHPLWKTSLCSYFRRHGNSCSHGTACRFAHGEEELRIRPDNTWDPTSERAKKALKSENGERCGVSEEVMMTEAVVDDDDGGDEENGGSGGSNHALSKCLVHLPRKWCSDNLRSFLNDAGIRFKHAKKKKGMMVGFVSFEDEEQMQSSSKDLEGKSIGNKRLKVADVIPRSFEKNSNSNAGSVATLNEENAGVDVDPNVTVEAGANSDNLAANGSLSKTKSLRDVVTPLAHMAYADQLEQKKNSIMQMLKKLTRNARKACPNGVSFPDWIVKSREIGGLPCNLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTIAGKYATIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRTNGNVADADSFGGIAEVMLIVQVSTAGFDDTKVSGEFKRLAQAFAVGATSHGPTLPLTALVVQDHQGISNVAPADAPLRLLPIRKTGDLEMDENADAMDVRIHDYISNLRFSISPTAFFQVNSLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVADAHRNAEINGIKNCKFICSKAEDVMGSLLKEYLNVPKEQVDDPKIAESSNDISKCGDLQEPENGEMASQSSENSNGEVGSEVQNCSGSENGNTSAQNSSEGANTSAQHFKNVVAIVDPPRAGLHPTVLKVLRTHSRLRRLVYISCNPETLVANAIELCTPSPIKMEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTQHCELVMLLER 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00362 855 MobiDBLite consensus disorder prediction 696 737 - -
Aip03g00362 855 MobiDBLite consensus disorder prediction 1 38 - -
Aip03g00362 855 Coils Coil 314 334 - -
Aip03g00362 855 ProSiteProfiles Zinc finger C3H1-type profile. 84 113 IPR000571 GO:0046872
Aip03g00362 855 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 557 855 IPR029063 -
Aip03g00362 855 SMART c3hfinal6 84 112 IPR000571 GO:0046872
Aip03g00362 855 Gene3D - 375 461 - -
Aip03g00362 855 Gene3D - 179 247 IPR012677 -
Aip03g00362 855 SUPERFAMILY RNA-binding domain, RBD 181 252 IPR035979 GO:0003676
Aip03g00362 855 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 100 855 IPR045850 -
Aip03g00362 855 MobiDBLite consensus disorder prediction 119 142 - -
Aip03g00362 855 MobiDBLite consensus disorder prediction 1 80 - -
Aip03g00362 855 ProSitePatterns RNA methyltransferase trmA family signature 1. 750 782 IPR030390 -
Aip03g00362 855 CDD AdoMet_MTases 603 657 - -
Aip03g00362 855 Gene3D Vaccinia Virus protein VP39 308 374 IPR029063 -
Aip03g00362 855 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 306 457 IPR029063 -
Aip03g00362 855 Pfam tRNA (Uracil-5-)-methyltransferase 742 791 IPR010280 GO:0006396|GO:0008173
Aip03g00362 855 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 112 IPR000571 GO:0046872
Aip03g00362 855 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 304 855 IPR010280 GO:0006396|GO:0008173
Aip03g00362 855 SUPERFAMILY CCCH zinc finger 82 117 IPR036855 GO:0046872
Aip03g00362 855 CDD RRM_SF 178 243 - -
Aip03g00362 855 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 100 855 - -
Aip03g00362 855 Gene3D Vaccinia Virus protein VP39 540 854 IPR029063 -
Aip03g00362 855 Pfam Methyltransferase domain 601 660 IPR025714 -
Aip03g00362 855 MobiDBLite consensus disorder prediction 674 737 - -
Aip03g00362 855 MobiDBLite consensus disorder prediction 39 66 - -
Aip03g00362 855 Gene3D - 77 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00362 Aip-Chr3 3485430 3490175 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip03g00362 tRNA_U5-meth_tr 1.3e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00362 K15332 - gmx:100777601 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00362 03 3485430 3490175 Aip03g00362 03 3485430 3490175 ECH