Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00341 ATGAAGGAAGGTGAGAAGAGCTTGGATCCGCAGCTATGGCATGCGTGTGCAGGTTCCATGGTTCAGATGCCTCAAGTGAACTCGAAAGTTTTCTACTTTCCACAAGGGCATGCAGAACACGCTCAAACCGCCATTGATCTCTCAACTCCTTCTTTGAGGGTTCCACCACTCATCCCTTGCAGGGTTGCAACAGTGAGATTCATGGCTGACCCTGAAACAGATGAAGTTTTCGCAAAGATAAAGCTTGTTCCACTGAAAAGTTCAGAGCTTGATCAAAACGACAACACCTTGGAGGGTGAAGTTGTTGTGGAGAATCAAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACCCAATCTGATGCTAACAATGGTGGGGGTTTCTCAGTCCCTCGTTACTGTGCAGAAACCATCTTCCCCCGGCTCGATTACTCGGCGGAGCCGCCGGTTCAGACGGTGGTGGCAAAGGATGTTCATGGTGAGCTATGGAAGTTTAGGCATATATATAGAGGTACACCAAGGAGGCACTTGCTTACAACTGGTTGGAGCACTTTTGTTAATCAGAAGAAGCTTGTAGCTGGTGATTCTGTGGTGTTTCTGAGGGCTGAAAATGGTGATCTTTGTGTTGGGATTAGGAGGGCAAAAAGGGGAATTGGAATTGGAATTGGTGGTGGTTGTGAGGGTTCATCTTTGTGGAGTTCAGCTTCTTCTGGTAATGGTAATAGTAATGGAGGGCCTTATGGAGCATTGTCAATGTTCTTGAGAGAGGAGAACAACAAGCTTTTAAGGAATAGTAACGGAAGGTGTTCTTATTCTTCTTCTTCTTCTTCTTCAAGGGTGAGAGCTGAAGATGTTGTGGAAGCTGTGTCAATGGCTGCAAGGAACCAAGCATTTGAGGTTGTGTATTCTCCAAGGGCAAGCACTCCTGAGTTCTGCATTAAGGCTTCTTCTGTGAGTGATGCAATGAGGATCCAATGGTGTTCTGGCATGAGGTTCAAGATGCCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACTGTTGCTTCCGTTCAGGTTGCTGATCCTATCCGCTGGCCGAATTCGCCTTGGCGAATTCTTCAGGTTACTTGGGATGAGCCTGATTTGCTACAAAATGTGAAGAGAGTTAGTCCATGGTTGGTTGAATTGGTATCAAACATGCCAATCATCAATATCTCGCCATTCTCTCCACCAAGGAAGAAGTTGAGGTTTCCTCAGCACCCAGACTTCCCTCAGGACATTCAGTTCACATCGTTACCAACGTTTCCGGGCAATTATATCGGGCCGAATAGCCCCATGTATTGTTTATCTGAAAACGCTCCCGCAAGCATACAGGGAACCAGGCATGCTCAAATCGGAATATCTCTTTCAGATTTCCACCTCAGCAATAAACTGCAGTTGGGGCTGCTTCCAACTAGTATCCATCGGCTCGATGTTCATAACCGCGACATGACCAACCATGATAAGAGCAAAGAGAGCTTATCATGCTTGCTCACCATGGGAAAATCCAACAAGAGTCTGGAGAATTCTGATAACAATGTTAAGACACACCAGTTTTTGCTTTTTGGTCAGCCTATTCTCACTGAGCAACAAATCTCTCGAACCGGAAAAGACTCGCCGGACGAGACTAAGATCAAAGAGAAGTGCTTCTTAGGTGAAGCTAAATTTGCAGTTTCACAGCACATTCCACCAGGAAAAGCTTCTAATGCTGCCGAGTTTTCGTGGCAAATCGGCTTGGAAACTAGCCATTGCAAGGTTTTCTTGGAATCAGAAGATGTAGGAAGAACCTTAGACCTATCAAGCCTTGGTTCATATGAAGAACTCTATAGAAAACTGGCCAACATGTTTGATATGGAACGATCTGAGATCTTCAACCATGTTCTTTACCGCGACGAAACAAGTGCTGTTAAGAAAATTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTTATGGATTCAAGCAGCAAAAATATTAGAAGGGCATGGATTACAGGGAGTCGCAGTGGTGAACATGGAATTGATGCATCAAACAAAACTGGTCCTCTTAGCATATTTGTTTAA 2109 0.4486 MKEGEKSLDPQLWHACAGSMVQMPQVNSKVFYFPQGHAEHAQTAIDLSTPSLRVPPLIPCRVATVRFMADPETDEVFAKIKLVPLKSSELDQNDNTLEGEVVVENQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGIGIGGGCEGSSLWSSASSGNGNSNGGPYGALSMFLREENNKLLRNSNGRCSYSSSSSSSRVRAEDVVEAVSMAARNQAFEVVYSPRASTPEFCIKASSVSDAMRIQWCSGMRFKMPFETEDSSRISWFMGTVASVQVADPIRWPNSPWRILQVTWDEPDLLQNVKRVSPWLVELVSNMPIINISPFSPPRKKLRFPQHPDFPQDIQFTSLPTFPGNYIGPNSPMYCLSENAPASIQGTRHAQIGISLSDFHLSNKLQLGLLPTSIHRLDVHNRDMTNHDKSKESLSCLLTMGKSNKSLENSDNNVKTHQFLLFGQPILTEQQISRTGKDSPDETKIKEKCFLGEAKFAVSQHIPPGKASNAAEFSWQIGLETSHCKVFLESEDVGRTLDLSSLGSYEELYRKLANMFDMERSEIFNHVLYRDETSAVKKIGEEPFSEFMKTAKRLTILMDSSSKNIRRAWITGSRSGEHGIDASNKTGPLSIFV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00341 702 Gene3D - 110 214 IPR015300 -
Aip03g00341 702 SUPERFAMILY DNA-binding pseudobarrel domain 97 214 IPR015300 -
Aip03g00341 702 CDD B3_DNA 111 212 IPR003340 GO:0003677
Aip03g00341 702 SMART B3_2 112 214 IPR003340 GO:0003677
Aip03g00341 702 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip03g00341 702 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Aip03g00341 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip03g00341 702 PANTHER AUXIN RESPONSE FACTOR 2 679 - -
Aip03g00341 702 Gene3D - 588 675 - -
Aip03g00341 702 ProSiteProfiles PB1 domain profile. 590 673 IPR000270 GO:0005515
Aip03g00341 702 Gene3D - 324 397 - -
Aip03g00341 702 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00341 Aip-Chr3 3320657 3323868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00341 3 676 B3 DNA Binding Superfamily AT2G28350 58.416 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip03g00341 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00341 - - gmx:100814686 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00341 03 3320657 3323868 Aip03g00341 03 3320657 3323868 ECH
Aip08g00525 08 4276109 4280096 Aip03g00341 03 3320657 3323868 ECH
Aip02g03352 02 110221954 110224324 Aip03g00341 03 3320657 3323868 ECH
Aip08g00525 08 4276109 4280096 Aip03g00341 03 3320657 3323868 PCT