Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00340 ATGAAGGATTGTTGGTTTTTGGACAACAATTTGAATGGGGTATCGGATGAAGCTTTTGATGTGGTGGGGTTTTTTGATTTCCCAATAGAAGATGTGGAAGATGATGCTGTGGAGGAGGATTGGGGTGCTCAGTTTAAACAACTTGAAGAGCCATCTCTTGGTGTGTTTTCGGTATCACCATCCGGACTGAGTGATAAAACTGAGAATGAGAATCCGAAACTTGGGAGGAGTATCTCTACTCCTGTGGCCGATCCTGCTCGACCTACATACGGCAATACTATTCGGAACCAGAATGTCTCTTTTAATGGGAAAAGGGTGCCCAAGTTCCAAACCTACAGCCCTGTGTCTGTCTTTGAAAGCAGTAGTTCCTCCTCGGTCGAGAACTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTCCTCGAGGCAAACGCCGGCCTCTCTCAAGCTTCAGCTTGCTATTATCTGTTCCATTCGTCTCTAACTCCCCAAAAGATCATACTGAGAAGAAGGGATCTGCATTGCAAGGATCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCTACGCCGCAGTGGAGAGAAGGACCCATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCCGGCCGGCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCTACGTTTGTACCATCATTGCACTCGAACTCTCACAGGAAGGTCATCGAAATGAGGAGCCGAACTGCGACAGAGACTCTTAAGGGTTCTTCTATGTTGTAA 783 0.4789 MKDCWFLDNNLNGVSDEAFDVVGFFDFPIEDVEDDAVEEDWGAQFKQLEEPSLGVFSVSPSGLSDKTENENPKLGRSISTPVADPARPTYGNTIRNQNVSFNGKRVPKFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRPRGKRRPLSSFSLLLSVPFVSNSPKDHTEKKGSALQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHRKVIEMRSRTATETLKGSSML 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00340 260 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 22 248 - -
Aip03g00340 260 MobiDBLite consensus disorder prediction 57 97 - -
Aip03g00340 260 MobiDBLite consensus disorder prediction 57 76 - -
Aip03g00340 260 SMART GATA_3 178 228 IPR000679 GO:0006355|GO:0043565
Aip03g00340 260 PANTHER GATA TRANSCRIPTION FACTOR 22 248 - -
Aip03g00340 260 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 241 - -
Aip03g00340 260 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Aip03g00340 260 ProSiteProfiles GATA-type zinc finger domain profile. 178 214 IPR000679 GO:0006355|GO:0043565
Aip03g00340 260 Gene3D - 177 228 IPR013088 GO:0006355|GO:0008270
Aip03g00340 260 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
Aip03g00340 260 CDD ZnF_GATA 183 230 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00340 Aip-Chr3 3302654 3306275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00340 8 248 C2C2-Gata Transcription Factor Family AT1G08000 39.427 4.13e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip03g00340 GATA 5.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00340 - - aprc:113853859 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00340 03 3302654 3306275 Aip03g00340 03 3302654 3306275 ECH
Aip08g00526 08 4289645 4293785 Aip03g00340 03 3302654 3306275 ECH
Aip08g00526 08 4289645 4293785 Aip03g00340 03 3302654 3306275 PCT