Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00333 ATGCCTCTGATTGAAACTTTGATTGAGAGAATTTGTCACTTGGAAATGAGAATGGTGTTTGGGAATACAAGATGTGTGAGATTTCAAGATGATGCTGAACTAGCCAAAATCCCAACAGCTAATGGTGACAATGGAATTAAGCTACTTAGTTCCAATAAAGATCACAACAATAGAGAAGCAAGAAAAGCAAAGAAGTTCTTGAAAGCCAGAGTATTATCAAGAGTTTTCTCAGAAGACTATGAGAGAGTAAGAAGAAGGATTTTAGACCCAAGAGGACAAACCATTCACAGATGGAACAAGATTTTCTTGTTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTATTCTTTTACTTGCCACTAGTTCAACATCAAGTGTGCATTGGTATTGGAACAACACTTGAAGTGATCCTCACTATTATCAGATCAATAGCAGATTTATTCTACATGATTCAGATCATCATGAGGTATCGCACGGCTTATGTTGCGCCTTCTTCGCGTGTTTTTGGTAGAGGAGAGCTTGTTATAGACCCTGCAAAGATAGCAGCTAGGTACTTCTTCAAAGGTTTCTGGCTAGACTTTGTTGCCGCGTTACCCCTTCCTCAAGTGCTGATCTGGATTGTGATCCCCAATCTTGGAGGCTCAACCATGGCGAATACGAAAAACGTCCTTCGATTCATCATCATTTTTCAATATATACCAAGGCTGTTTCTGATTTTTCCACTTTCATCCCAAATTGTAAAGGCTACTGGGGTTGTGACAGAGACAGCATGGGCTGGTGCTGCTTATAACCTTATGCTTTACATGCTGGCTAGCCATTTTTTTGGAGCTTGCTGGTACCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAGGAGAGTCTGTGATATGAAAAATTCATCTTGTAAATATAGTTTCTTTGACTGCAACATGGTTAAAAATCCACTCAGGGACTCATGGTTTAAGGGAAGTAATGTCACAAAGTTATGTTCACCAGAAGCTCACTTTTATCCCTTTGGCATATATGGTGATGCAGTCACATCAAGAGTTACAACCTCACCATTCTTTAAGAAGTACTTCTATTGTCTTTGGTGGGGTCTCAGGAATTTGAGTTCTTTAGGACAAAATCTACTCACTAGCACTTTTGTTGGAGAAATAATGTTTGCCATTCTGGTTGCAACCCTTGGATTGGTTCTTTTTGCATTACTCATTGGTAATATGCAGACATACCTTCAATCAACAACTGTGAGGCTAGAAGAGTGGAGGGTCAAAAGAACTGATACAGAACAATGGATGCATCACAGACAGCTTCCTCAAGAACTAAGACAATCCGTGCGCAAATACGATCAGTATAAATGGCTGGCGACTCGAGGAGTGGACGAAGAAGCCCTTCTCAAAGATCTTCCATTAGATCTTCGAAGAGACATCAAGCGCCACCTTTGTATCGAGCTGGTTCGACGAGTTCCATTGTTTGAACAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTTCATTGTGCACAGAAAGCACATATCTTGTCCGAGAAGGCGATCCGGTCAACGAAATGCTCTTCATAATCAGAGGAAATCTTGATTCCTACACAACCAATGGCGGCCGGACCGGATTCTTCAACTCGTGCCGGATCGGCCCTGGCGATTTCTGCGGCGAGGAACTCCTAACATGGGCCTTAGATCCAAAACCAAGTGTGATAATACTTCCTTGTTCCACAAGAACAGTTAAGGCCATATCAGAAGTTGAAGCATTTGCACTCATGGCAGAAGATTTGAAATTTGTTGCATCACAATTTAGAAGATTGCATAGCAAGCAACTTAGGCACAAATTCAGGATTCACTCACACCAATGGAGAACTTGGGCTGCATGTTTCATACAAGCTGCATGGAGAAGGTTCAAGAAGAGAAAAGAAGCTGCTGAATTGAGGGCAAGAGAGGAAAATGAGGCTGAAACACATGCAACAAGGAGCAATAGGAAGGGTATGGATGTAAATTCAGGTGCAGATTCTGAAGTAGTAAGCTCTTTGCAGAAGCCAGCTGAACCAGACTTTTCTGTTGATGAGTGA 2091 0.4156 MPLIETLIERICHLEMRMVFGNTRCVRFQDDAELAKIPTANGDNGIKLLSSNKDHNNREARKAKKFLKARVLSRVFSEDYERVRRRILDPRGQTIHRWNKIFLLACLVSLFVDPLFFYLPLVQHQVCIGIGTTLEVILTIIRSIADLFYMIQIIMRYRTAYVAPSSRVFGRGELVIDPAKIAARYFFKGFWLDFVAALPLPQVLIWIVIPNLGGSTMANTKNVLRFIIIFQYIPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHFFGACWYLLSIERQEACWRRVCDMKNSSCKYSFFDCNMVKNPLRDSWFKGSNVTKLCSPEAHFYPFGIYGDAVTSRVTTSPFFKKYFYCLWWGLRNLSSLGQNLLTSTFVGEIMFAILVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRKYDQYKWLATRGVDEEALLKDLPLDLRRDIKRHLCIELVRRVPLFEQMDERMLDAICERLKPSLCTESTYLVREGDPVNEMLFIIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPKPSVIILPCSTRTVKAISEVEAFALMAEDLKFVASQFRRLHSKQLRHKFRIHSHQWRTWAACFIQAAWRRFKKRKEAAELRAREENEAETHATRSNRKGMDVNSGADSEVVSSLQKPAEPDFSVDE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00333 696 Gene3D Helix hairpin bin 417 481 - -
Aip03g00333 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 28 696 - -
Aip03g00333 696 SMART cnmp_10 490 622 IPR000595 -
Aip03g00333 696 Pfam Ion transport protein 98 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip03g00333 696 SUPERFAMILY Voltage-gated potassium channels 89 412 - -
Aip03g00333 696 PANTHER - 28 696 - -
Aip03g00333 696 MobiDBLite consensus disorder prediction 651 696 - -
Aip03g00333 696 ProSiteProfiles cAMP/cGMP binding motif profile. 490 576 IPR000595 -
Aip03g00333 696 SUPERFAMILY cAMP-binding domain-like 420 619 IPR018490 -
Aip03g00333 696 MobiDBLite consensus disorder prediction 651 666 - -
Aip03g00333 696 PRINTS EAG/ELK/ERG potassium channel family signature 153 162 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip03g00333 696 PRINTS EAG/ELK/ERG potassium channel family signature 270 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip03g00333 696 PRINTS EAG/ELK/ERG potassium channel family signature 359 376 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip03g00333 696 PRINTS EAG/ELK/ERG potassium channel family signature 385 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip03g00333 696 PRINTS EAG/ELK/ERG potassium channel family signature 403 412 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip03g00333 696 PRINTS EAG/ELK/ERG potassium channel family signature 453 460 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aip03g00333 696 MobiDBLite consensus disorder prediction 667 681 - -
Aip03g00333 696 Gene3D Jelly Rolls 488 609 IPR014710 -
Aip03g00333 696 CDD CAP_ED 490 622 IPR000595 -
Aip03g00333 696 Gene3D - 98 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00333 Aip-Chr3 3214421 3218378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00333 65 695 Ion Channels AT2G28260 75.981 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00333 K05391 - gmx:100791992 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00333 03 3214421 3218378 Aip03g00333 03 3214421 3218378 ECH
Aip08g00534 08 4392031 4395412 Aip03g00333 03 3214421 3218378 PCT