Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00330 ATGGGAAGCAAATGGAGAAAAATGAAGCTTGCTCTTGGCTTCAACACTTGTGTTCACATTCCTAGAGATTTAGATGACTCCCCTTCAGCTGCAGCCGCCAGATTTTCCGACGTTACCTCGCCGTCGGTTGTGTCGCCGGCCTCCGGCGGATACTACTCTTCAAGCACCCCAACGACGCCGTCTTCTTCCTCTGCTCTCCGGTTACCAAAATCTCCAAAGGGAACTTGTGCAATATGCTTGAACACGATGAAGCCGGGGCAGGGCCATGCCATTTTTACTGCCGAATGTTCTCACTCGTTTCATTTCCATTGCATCACTTCGAATGTAAAACATGGCAACCAGATATGTCCTGTCTGCCGAGCAAAATGGAAAGAAATTCCTTTCCATAGTCCTGCTTTTAACGGCTACCATGACATGGCTCGAATCAACCCGGTAACTGCAAGGGATGATGCTTGGACAACTGTCATGAGGAGGATCCCTTCGCCACAAGGGGACTCGGTTCGGCCGATTCCATCGCTCTATCATGTTCCTGAACCAGCTATCTTTGATGATGATGAAGCCTTGGATCAACAAAATTCAGTTACCTGCCATAAGAATGAGGCTGATCATGATGAGATTATGAACAGAATTGAGATAAAAACATATCCTGAAGTTTCATCTGTTCCAATGTCATCCTCCCATGATAATTTCGCCGTACTAATTCATCTCAAGGCTCCTCAGGCAGCTACAAAACAAAGTAATGTTGGAACCAACGGCGAAACAACTCCGAATTCTCGTGCCTCTGTTGATCTTGTCACAGTTCTTGATGTAAGTGGTAGCATGGGAGGCACTAAAATTGCATTGCTAAAACGAGCTATGGGTTTTGTCATACAGAATCTCGGTCCATCGGACCGTCTTTCTGTCATTGCCTTCTCCTCCACGGCAAGGCGGATCTTTCCTCTACGGCTGATGACTGATACCGGACGGCAACAGGCATTACAGGCTGTGAATTCTCTGTCTGCTAATGGTGGGACAAACATTGCTGAAGGCTTAAGGAAAGGTGCCAAGGTATTCACAGAATGCCGGTCGAAGAATCCGGTTTGCAGCATTATACTACTCTCTGATGGACAGGATACTTACACAGTGAATAGCAGGCCTAGTGTTGGAGCAGATTACCAGTCACTTGTCCCGAATTCGATTCATCGGAACAATGGAGCAGGATTGCAGATACCAGTGCATGCTTTTGGCTTTGGTTCTGATCATGATTCTACTTCGATGCATTCGATTTCTGAGATATCCGGCGGGACATTTTCGTTCATTGAAGCCGAGGATGTGATTCAGGATGCATTTGCACAATGTATTGGAGGTCTCTTGAGTGTTGTGGTGCAGGAATTACAAGTTGAAGTTGCTTGCATTCATCCTAGTCTTCAACTGAATTCGGTTAAAGCCGGAAGTTATCAAACAACCTTGTCAGGCAATGCTAGAATGGCTTCCATTAGTGTCGGAGATCTGTATGCCGACGAAGAAAGAGACTTTCTGGTGACAGTTAATGTTCCGGCCGACATGTCAAGCCATGAGATGTCATTGTTGCTTGTTAAGGGCCTTTATAGAGATCCCATCACAAAAGAAATGGTGTTTTTGGAAGAAAACTCTGAAGTGAAGATTCAAAGATCTGATTCTGGTGGAGTACAAGAAGTATCAATACAAGTGGACAGACAGCGAAATAGGCTTCGAGTAGCCGAGGCAATAGCCGAGGCTAGAATCGCAGCCGAACGTGGCAATCTGTCCACTGCAGTTTCTGTCCTTGATAGCTGCCACAAGGCATTGTCTGAGACTGTTTCTGCCAAAGCAGGGGACCGGCTATGCGCCGCGCTTTCGGCCGAGCTAAAGGAGATGCAAGAAAGGATGTCAACTCAACGTGTTTATGAGCAGTCTGGAAGGGCTTATGTTCTTTCAGGATTGAGTTCACATTCATGGCAAAGGGCAACCGCACGAGGCGATTCCACAGATAGTACTAGCCTTGTTCAAGCATACCAGACTCCGTCCATGGTCGACATGGTCACACGTTCACAGACCATGATCTTGGGCGCGCCAACCCAACATCGGCGCGTCCTAAGGCCGGCGAAGTCATTTCCTGAGAGGCAGAGCCAAAGAGCATTGTTCTACCCATGGTTGTACCAAAACAAGGTGACATTTTTCTTGTTTAATTTCTTGTTTGGTGTCCCACTTCCCATTCCCACAAAGCTCCTCATTCTCAAGATTGTTGCAAGAATTATTGTAGATGATGATTGGAGCTTGGATAACTCAAAACCTTCTAGCCTCTTCTTAATGCAGCTCAAGCTCAGAGTTGCTCTTGCTATCATCTTCGTCTTGCTCTCGATTGAGCACTCATTTTCTGATGAGCCTTCTGATACCTATGGCCTAAACAAGTGGAAATGTACATGTGCTTTCCAAGGGAACCAGAGCTACTCTATTGCAAATTGTTCTAAGTCATGTGATTGCCGTTCGGATGCTGAAGAGACTTCATCTATATGGACATGCTTATGTAATCCCAATGGATTCCCCCAAATGGGAGTGGCATCAGCAAATGGCCACAACCATAATTGCTTCAGTGCCTGCAACTGTACCTGGGGAACTAACAGCTTGCCACTAGGTTCAAAGAAACACATCTCCAGCAAGACTGTTGTAGTTATTCTACTAATATGTGTTGTCTGTACGACCATTGCATTTCTTACCTCAGTCCTATGCTATGTCTACCGAAGGGACAGATGTCCTATTCAATCACCAATATTTTCACCGGATAAGGAAACAAGTAGTGGTAGCACTGCCAACTTAATTAGTCACAGGACAGTGACTTCTTCAGTGGCAGAAACAAAATTTGCTATTGATTCTCCTGTTAGTAATATGACAGGATGCTTTCAGAAAGCCTCTTTCTTGTTTGGGATCCAGAGGGAAACTTTTCATGGAAATATTATTCAATTTTCCTTTGCCGAACTAGAAAATGCCACTGAAAACTTTCTAGGCTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGCGGTCGTCTGAAAGATGGTAGTATCGTGGCAGTTAAGCGACTAAAAGATCCAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAAGAGATTGAACTATTATCTAGACTTCATCATTGCCATTTGGTGCCTTTGCTTGGATACTGCTCAGAATTAAAAGGGAGACATTTTCAAAGGCTACTAGTATTCGAGTACATGTCTAATGGGAATTTGAGGGACTGGTTAGATGGAGTGTCTGCAAAAAATCTCGACTGGACCACACGCGTCACAATCGCAATTGGAGCCGCAAGGGGCTTGGAATATCTCCATGAAGCGGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACAAACATTCTTCTGGATGAAAATTGGCAAGCAAAGATAACTGACCTTGGTATGGCTAAGAACGTGCGAGCGGATGATCACCCCAGCTGTTCGAATTCTCCAGCTAGAATGCAGGGAACATTTGGATATTTTGCACCCGAGTATGCTATTGTTGGGCGAGCCTCTCTTGAATCGGATGTTTTCAGTTTTGGGGTGGTTCTCCTTGAGCTTATCAGTGGTCGGCAACCAATCTATAAAACTACGGGCAAAGAAGAAAGCCTTGTTATTTGGGCTGCGCCCCGCTTACAGGATAGTAGGCGAGTAATATTGGAGTTGGTCGATCCACAACTGAAAAGAGACTTCCCGGAAGAAGAGGTACAGATTATGGCATACTTAGCAAAGGAATGTTTGTTGCTGGATCCGGAAACTCGTCCATCTATGAGTGAGGTTGTTCAAATTCTCTCAAGTATTTCGCCTGACAAATCGAGACGAAGAAGAAACATTCCAGCTAGCCTGTTCCTGGAACCAGTAGAAGCAGAAAGATCTCCAGTTCATAATTCATTGCAACAAGACACTGATCATAGATTCTGGGTTGGGAACAAAAACAAAGAAGCTAATGTAGATTCAGCTGAGCATACAGAGAATTTGACCCTCTTGACATCAAAATCCGAGAGTTGCCACGTGTCAGAAGAGGAAATAGTAGACCTAACTGAGCCGCGATACGAATCATTTTGCATGGCAAATGTCAATTTCTCATGA 4131 0.4503 MGSKWRKMKLALGFNTCVHIPRDLDDSPSAAAARFSDVTSPSVVSPASGGYYSSSTPTTPSSSSALRLPKSPKGTCAICLNTMKPGQGHAIFTAECSHSFHFHCITSNVKHGNQICPVCRAKWKEIPFHSPAFNGYHDMARINPVTARDDAWTTVMRRIPSPQGDSVRPIPSLYHVPEPAIFDDDEALDQQNSVTCHKNEADHDEIMNRIEIKTYPEVSSVPMSSSHDNFAVLIHLKAPQAATKQSNVGTNGETTPNSRASVDLVTVLDVSGSMGGTKIALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLRLMTDTGRQQALQAVNSLSANGGTNIAEGLRKGAKVFTECRSKNPVCSIILLSDGQDTYTVNSRPSVGADYQSLVPNSIHRNNGAGLQIPVHAFGFGSDHDSTSMHSISEISGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQVEVACIHPSLQLNSVKAGSYQTTLSGNARMASISVGDLYADEERDFLVTVNVPADMSSHEMSLLLVKGLYRDPITKEMVFLEENSEVKIQRSDSGGVQEVSIQVDRQRNRLRVAEAIAEARIAAERGNLSTAVSVLDSCHKALSETVSAKAGDRLCAALSAELKEMQERMSTQRVYEQSGRAYVLSGLSSHSWQRATARGDSTDSTSLVQAYQTPSMVDMVTRSQTMILGAPTQHRRVLRPAKSFPERQSQRALFYPWLYQNKVTFFLFNFLFGVPLPIPTKLLILKIVARIIVDDDWSLDNSKPSSLFLMQLKLRVALAIIFVLLSIEHSFSDEPSDTYGLNKWKCTCAFQGNQSYSIANCSKSCDCRSDAEETSSIWTCLCNPNGFPQMGVASANGHNHNCFSACNCTWGTNSLPLGSKKHISSKTVVVILLICVVCTTIAFLTSVLCYVYRRDRCPIQSPIFSPDKETSSGSTANLISHRTVTSSVAETKFAIDSPVSNMTGCFQKASFLFGIQRETFHGNIIQFSFAELENATENFLGSNLIGLGGSSYVYRGRLKDGSIVAVKRLKDPGGPEADSAFFKEIELLSRLHHCHLVPLLGYCSELKGRHFQRLLVFEYMSNGNLRDWLDGVSAKNLDWTTRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNVRADDHPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIYKTTGKEESLVIWAAPRLQDSRRVILELVDPQLKRDFPEEEVQIMAYLAKECLLLDPETRPSMSEVVQILSSISPDKSRRRRNIPASLFLEPVEAERSPVHNSLQQDTDHRFWVGNKNKEANVDSAEHTENLTLLTSKSESCHVSEEEIVDLTEPRYESFCMANVNFS 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00330 1376 SUPERFAMILY RING/U-box 74 127 - -
Aip03g00330 1376 ProSiteProfiles Zinc finger RING-type profile. 76 120 IPR001841 -
Aip03g00330 1376 PANTHER OS01G0253100 PROTEIN 773 1370 IPR045271 GO:0004714|GO:0006468
Aip03g00330 1376 SUPERFAMILY Protein kinase-like (PK-like) 980 1278 IPR011009 -
Aip03g00330 1376 SMART VWA_4 261 443 IPR002035 -
Aip03g00330 1376 CDD vWA_C3HC4_type 262 434 - -
Aip03g00330 1376 CDD STKc_IRAK 1005 1281 - -
Aip03g00330 1376 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 773 1370 - -
Aip03g00330 1376 Pfam RING-like zinc finger 76 105 IPR001841 -
Aip03g00330 1376 Pfam von Willebrand factor type A domain 263 444 IPR002035 -
Aip03g00330 1376 ProSiteProfiles VWFA domain profile. 263 447 IPR002035 -
Aip03g00330 1376 Gene3D Transferase(Phosphotransferase) domain 1 1080 1295 - -
Aip03g00330 1376 Pfam VWA / Hh protein intein-like 612 685 IPR032838 -
Aip03g00330 1376 Gene3D Phosphorylase Kinase; domain 1 974 1079 - -
Aip03g00330 1376 ProSitePatterns Protein kinases ATP-binding region signature. 1005 1027 IPR017441 GO:0005524
Aip03g00330 1376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1124 1136 IPR008271 GO:0004672|GO:0006468
Aip03g00330 1376 SMART serkin_6 999 1281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00330 1376 CDD RING-H2 76 120 - -
Aip03g00330 1376 MobiDBLite consensus disorder prediction 40 67 - -
Aip03g00330 1376 Pfam Protein kinase domain 1003 1276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00330 1376 SMART ring_2 76 119 IPR001841 -
Aip03g00330 1376 SUPERFAMILY vWA-like 260 447 IPR036465 -
Aip03g00330 1376 ProSiteProfiles Protein kinase domain profile. 999 1281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00330 1376 Gene3D von Willebrand factor, type A domain 263 448 IPR036465 -
Aip03g00330 1376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 227 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00330 Aip-Chr3 3189269 3202326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00330 770 1373 Receptor kinase-like Gene Family AT2G28250 52.217 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Aip03g00330 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00330 - - gmx:100818406 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00330 03 3189269 3202326 Aip03g00330 03 3189269 3202326 ECH
Aip08g00535 08 4398724 4405709 Aip03g00330 03 3189269 3202326 PCT