Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00322 ATGAGTAGTTTAAGGCCTGAATTGCATGTTGCACAGCAAATTCGGCGTGACAAGCTCAGATTCCAGAATCTACAACAAGATTTCCCAACAAACCTTGAAGAACAAATTTCACTTCACCAACAAGATTCCAGAATCTACAACATGCTTGATGATGTTGAACAACCACCACCACAACAACAATCTCTCTATTCATCACATTATTATGCTTCTTCATCCCCACAACAATGTATGATTAATAACAACTGTTACTATTACTCGGGTAATTTTGCAACACTAAGTCCTAGTGTGGCTAATAACCATAACCATATAGTGACGGTTGCACATTATTCTTCTTCACAGAATAGTAGTAGTAGTAATAATAATGCAGCTTTACAAGATATTCTGAATCTTAAGCCAGCTTCTAATAACTCAGAAATGGCTTCATCACTCATGCATCATCCTTATGTTATTGACAATTATACCCCTACTGCTGCTGCTGGTGGTGGTTGGAATAATCATAATAATAATCATAATCAGGGGTTGTCCTTATCACTCTCATCATCATCACCATTATCACATCATCATAGTCAAAATGTTCATGTGAAATCTTCTACTACTACTACTAATCCAATGATGATGAAGCCATCAAGTTACTATTACAGAAACAGTGTTGGTCCACTAGGTCCATTCACGGGATATGCAACAATCTTGAAGAGTTCAAGGTTCTTGAAGCCATGTCAAAAGTTGTTAGATGAATATTGCCGCCGCCATTCTGCTCCATCAACATCAGAATGGCCTTCTACTACTACTTGTGCTGATGATGATGATGATGATCGAAGTGATCATGGGTTACTTGTTTCTGAAAAGGGAGGACGTAGTAGTAATAATAATAATAATAATAATGTTGCAGCAGCAGGTTCTTCTTCATCTTCTTCCATGTTCCATGCCCCTTCTTCTTCTCCTTCTCGGCCAGAGTGCCAAAAGAATAAGGCCAAACTACTGTTCATGCAAGAAGAGGTTACAAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTTTCATCCTTTGAGACAGTGGCAGGCCTCAATTCTGCAACCCCATACGTTTCCTTGGCGCTCAAGTTAGTATCAAAGAACTTCAAGTCCCTAAAGAACTCCATCTCCAGTCAGCTCAAGCTTATATGTGAAGCCTTGGGAGAGGATTATCCGACAATGCCGCCGGCCCCGGCGAGTACTAGTAACCGATTCGAGTCGAACATGGCGAGGTTACAGAGGAACAAACCCGGTGGTGGTGGGGGTAATATGGACTTTGAACCTCAACAACATGTTTGGAGGCCGCAGCGCGGCTTACCGGAGCGCGCCGTGGCCATCCTTAAAGCATGGTTGTTTGAGCATTTTCTTCATCCGTACCCCACGGACACAGATAAACATATGCTAGCTACTCAAACTGGTCTATCAAGAAATCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGGGTATGGAAGCCAATGGTTGAGGAAATTCACATGCTCGAAACAAAAGGCGCCAATCAGATTTCTAGTAATAGAATAATGGGGGAGGGAACTTCAGCCTCCGATGAAAGTAGCAACCATGCCAAAGTATTAGTTGACCAACCTCTTCGGTGTTTGGAAATGGGATCATCATCATCATCCTTGGCCAATGCCACGGAGGAAAATGATGACATACATCATCATGAAGAGGTGCAATGGAGTCAAGAGAAGAGGTCTAAATTGGAATGCATGGATGGGACATTCATGGGTTTGATGCCGTTCCGCAGCGCCGGCGTCGGCGCCGAGGTTGGGGGACTTGGACCTGTGTCATTAACTTTGGAATTAAGGCATGGAGTTGAAGGATCACAACAACAACAACAAGAGATTCAACATCATGAGGAGCAGCTTAGACACCACTTTGGAGGGCACATGATTCATGATTTCGTAGGGTAA 1953 0.426 MSSLRPELHVAQQIRRDKLRFQNLQQDFPTNLEEQISLHQQDSRIYNMLDDVEQPPPQQQSLYSSHYYASSSPQQCMINNNCYYYSGNFATLSPSVANNHNHIVTVAHYSSSQNSSSSNNNAALQDILNLKPASNNSEMASSLMHHPYVIDNYTPTAAAGGGWNNHNNNHNQGLSLSLSSSSPLSHHHSQNVHVKSSTTTTNPMMMKPSSYYYRNSVGPLGPFTGYATILKSSRFLKPCQKLLDEYCRRHSAPSTSEWPSTTTCADDDDDDRSDHGLLVSEKGGRSSNNNNNNNVAAAGSSSSSSMFHAPSSSPSRPECQKNKAKLLFMQEEVTRRYKQYHQQMQMVVSSFETVAGLNSATPYVSLALKLVSKNFKSLKNSISSQLKLICEALGEDYPTMPPAPASTSNRFESNMARLQRNKPGGGGGNMDFEPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGANQISSNRIMGEGTSASDESSNHAKVLVDQPLRCLEMGSSSSSLANATEENDDIHHHEEVQWSQEKRSKLECMDGTFMGLMPFRSAGVGAEVGGLGPVSLTLELRHGVEGSQQQQQEIQHHEEQLRHHFGGHMIHDFVG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00322 650 ProSiteProfiles 'Homeobox' domain profile. 436 499 IPR001356 GO:0003677
Aip03g00322 650 Gene3D - 442 504 - -
Aip03g00322 650 SMART prehox3 224 384 IPR006563 -
Aip03g00322 650 SUPERFAMILY Homeodomain-like 441 505 IPR009057 -
Aip03g00322 650 Pfam Associated with HOX 229 383 IPR006563 -
Aip03g00322 650 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 24 619 - -
Aip03g00322 650 MobiDBLite consensus disorder prediction 250 320 - -
Aip03g00322 650 MobiDBLite consensus disorder prediction 161 206 - -
Aip03g00322 650 CDD homeodomain 439 500 IPR001356 GO:0003677
Aip03g00322 650 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 619 - -
Aip03g00322 650 MobiDBLite consensus disorder prediction 282 319 - -
Aip03g00322 650 MobiDBLite consensus disorder prediction 265 279 - -
Aip03g00322 650 SMART HOX_1 439 503 IPR001356 GO:0003677
Aip03g00322 650 Pfam Homeobox KN domain 456 495 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00322 Aip-Chr3 3073915 3083443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00322 230 508 Homeobox Transcription Factor Family AT4G34610 43.416 3.51e-63 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aip03g00322 POX 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00322 - - aip:107629241 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00322 03 3073915 3083443 Aip03g00322 03 3073915 3083443 ECH
Aip08g00540 08 4512976 4518924 Aip03g00322 03 3073915 3083443 PCT