Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip03g00297 | ATGGGAAGAGCTCCATGTTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCTGAAGAAGACTTAAAGCTCAAAGAATACATACACAAGCATGGCACTGGTGGCAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTCAAGAGATGTGGGAAGAGTTGCAGGCTGAGATGGCTTAACTATCTGAGGCCAAACATTAAGCATGGAGAATTTTCTGAAGAGGAAGACAGAATCATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGAAGGACTGACAATGATATAAAGAATTATTGGAACACTAAGCTCAAGAAAAAACTCATCTCTGGTTTCCTTCCCAATTCTTCTTCTATTCATCAAAGAAAACATCATCAACAACAACAACCTCCATTTCCATCATCATCAATGTACATGGATCAATATTATGGATCTTATGTCACAGGCCTTGTTGATCCTATTTCACTTCCTTCAACTGAATACTATGCAAACACAACAACAACAACCTCAGTTCCATTTTACCAGCACCAAGTAGATTCCATTGTTAGCCCCAGCAGCATGCAACAAAATTATCACATGTTTGGAAGTGAAGGTAGTTGCAGTTCCTCTGATAATGGAAGCAGTATCAAGCAAGAGGAAATTGGGTATCATCATCAAGGATCATACAACAACATTATTGCATTTGATGACTTCAACAACAACAATAAGTTTCTTGTTATGCCTAGTAGTTTCAATGATAATAATAATAATAGCATTGTTAATTATGATGGTGGTGAAAATATTACTGAATATGATCTTGAGGAAATTAAGCAATTGATTAGTGTTAGTAGTAGTGTTGATGAAATCAAGGAGGAGAAACAACCTATTTACTATTATTATTGA | 909 | 0.3729 | MGRAPCCDKANVKRGPWSPEEDLKLKEYIHKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLISGFLPNSSSIHQRKHHQQQQPPFPSSSMYMDQYYGSYVTGLVDPISLPSTEYYANTTTTTSVPFYQHQVDSIVSPSSMQQNYHMFGSEGSCSSSDNGSSIKQEEIGYHHQGSYNNIIAFDDFNNNNKFLVMPSSFNDNNNNSIVNYDGGENITEYDLEEIKQLISVSSSVDEIKEEKQPIYYYY | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip03g00297 | 302 | ProSiteProfiles | Myb-like domain profile. | 9 | 62 | IPR001005 | - | |
| Aip03g00297 | 302 | Pfam | Myb-like DNA-binding domain | 14 | 62 | IPR001005 | - | |
| Aip03g00297 | 302 | Pfam | Myb-like DNA-binding domain | 69 | 111 | IPR001005 | - | |
| Aip03g00297 | 302 | PANTHER | OS09G0431300 PROTEIN | 1 | 289 | - | - | |
| Aip03g00297 | 302 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
| Aip03g00297 | 302 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 117 | IPR017930 | - | |
| Aip03g00297 | 302 | SMART | sant | 67 | 115 | IPR001005 | - | |
| Aip03g00297 | 302 | SMART | sant | 13 | 64 | IPR001005 | - | |
| Aip03g00297 | 302 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 62 | IPR017930 | - | |
| Aip03g00297 | 302 | Gene3D | - | 7 | 68 | - | - | |
| Aip03g00297 | 302 | CDD | SANT | 16 | 62 | IPR001005 | - | |
| Aip03g00297 | 302 | Gene3D | - | 69 | 140 | - | - | |
| Aip03g00297 | 302 | PANTHER | TRANSCRIPTION FACTOR RAX3 | 1 | 289 | - | - | |
| Aip03g00297 | 302 | SUPERFAMILY | Homeodomain-like | 11 | 109 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip03g00297 | Aip-Chr3 | 2875546 | 2876885 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip03g00297 | 1 | 118 | MYB Transcription Factor Family | AT5G57620 | 90.678 | 1.21e-78 | 240 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Aip03g00297 | Myb_DNA-binding | 9.7e-16 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip03g00297 | K09422 | - | gmx:100779919 | 319.316 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip03g00297 | 03 | 2875546 | 2876885 | Aip03g00297 | 03 | 2875546 | 2876885 | ECH | |
| Aip08g00566 | 08 | 4875612 | 4879427 | Aip03g00297 | 03 | 2875546 | 2876885 | PCT |