Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00285 ATGCTCGCATTCCGGCCATGCTTCTTCAACCCACCACTCTGCCGCCCCATTTCCGTTAAAGTTCTCTCCTTTTTCGCATTTCCTTCTTCTCACATTCTCTCTCTCCCTTTCCCCCATCGCACAATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCCGCCGCCGCCGCCGCTGCCAAGAAGAAGAAAGCCGAGCAGTCGCAGCAACCAACTGTTTCTTCTCCCAAGAAACGAAAACCTTCATCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGACCCCAAACCCTCCGAAACCGTTCCTACGCCAACGAGTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCATTCCGCAGCTGAAGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTGACATGATTTCTATGGAGCCTGGCAGAATCAAGATGACAGATATTGTGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTCGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCGATTATTAGGGCACTTGCTGAGGCAACTGGAAGTACTGAATCCAAAATCAAGACGCAGTATCAGAAAGTGGGTGATTTGGGAAAAGTTGCCAAGGAGTGCCGTTCATCTCAGTCCATGATGCGGAAACCTGAGGCTCTGACTATTAGGAAGGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAAAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTCAATATCTTATCTGTTTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGCTGGCATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTACTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACGCATGGTGTATGGAAACTTCCATCAATATGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCAACGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGGAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGGTACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATGATCGTGAGAAACAGACCATCCGTTCTTTCCAGGATCTTGCTACTCGGCCTCGTAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACATTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGGGTCAAGCATAGGGGACTCGCTAGATTTGGTACCTATAGCTGCATTCTATGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGGAACGGGATTTACTGAAGACGTGCTCGAACAGCGTTCTAAAAGTCTTGGTTCTGAAGTGATTCCTGGGCCAAAGCCATACTATCGATATGGAGATACAATGAAGATGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATTTGACCATTAGCCCAGTTTACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATCATCTGAGCAGGTTGCTGAGATGTATAATGCTCAAAAAGCCACTCAAACTAAAGAAAAAGAAAAAAACAAAAACAAACAGGATGGTAGTGAGTCACCAAAAAGAGAGATTGGCAGTGAGTCACCAAAAAAACAGATTGGCAGTGAAGACAAAGACGAAGTCGCAGATGAAGATGAAGATGAAGATGAAGATGAAGATGTAGATGTAGATGTAGATGTAGATGTAGATGTAGATGTAGATGTAGATGCAGATGAAGATGAAGATAAGTGA 2448 0.4485 MLAFRPCFFNPPLCRPISVKVLSFFAFPSSHILSLPFPHRTMTKPPSAFDALMSGARAAAAAAAKKKKAEQSQQPTVSSPKKRKPSSSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEPEKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSLLALALDMISMEPGRIKMTDIVCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIRALAEATGSTESKIKTQYQKVGDLGKVAKECRSSQSMMRKPEALTIRKVFNTFRLIAKESGRDSQKKKKNHIKALLVAATDCEPQYLICFLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPAGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSICNFTPGIPVGPMLSKPTKGISDILNSLQDVEFTCEYKYDGERAQVHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYDREKQTIRSFQDLATRPRKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDIEEIQKFLDKAVGSSIGDSLDLVPIAAFYGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEDVLEQRSKSLGSEVIPGPKPYYRYGDTMKMPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASSSEQVAEMYNAQKATQTKEKEKNKNKQDGSESPKREIGSESPKKQIGSEDKDEVADEDEDEDEDEDVDVDVDVDVDVDVDVDADEDEDK 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00285 815 MobiDBLite consensus disorder prediction 778 815 - -
Aip03g00285 815 Pfam ATP dependent DNA ligase C terminal region 608 720 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aip03g00285 815 Gene3D - 147 412 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip03g00285 815 MobiDBLite consensus disorder prediction 60 140 - -
Aip03g00285 815 ProSiteProfiles ATP-dependent DNA ligase family profile. 519 621 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip03g00285 815 MobiDBLite consensus disorder prediction 69 103 - -
Aip03g00285 815 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 153 403 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip03g00285 815 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 229 588 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aip03g00285 815 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 589 752 - -
Aip03g00285 815 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 66 589 - -
Aip03g00285 815 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 405 587 - -
Aip03g00285 815 MobiDBLite consensus disorder prediction 740 777 - -
Aip03g00285 815 Gene3D - 590 752 IPR012340 -
Aip03g00285 815 Pfam ATP dependent DNA ligase domain 413 588 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip03g00285 815 CDD OBF_DNA_ligase_I 591 737 - -
Aip03g00285 815 Gene3D DNA ligase/mRNA capping enzyme 413 589 - -
Aip03g00285 815 Pfam DNA ligase N terminus 171 346 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip03g00285 815 CDD Adenylation_DNA_ligase_I_Euk 402 609 - -
Aip03g00285 815 PANTHER DNA LIGASE 1 589 752 - -
Aip03g00285 815 PANTHER DNA LIGASE 1 66 589 - -
Aip03g00285 815 SUPERFAMILY Nucleic acid-binding proteins 591 738 IPR012340 -
Aip03g00285 815 MobiDBLite consensus disorder prediction 739 815 - -
Aip03g00285 815 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 437 445 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00285 Aip-Chr3 2781108 2787935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00285 1 739 Core DNA Replication Machinery Family AT1G08130 58.994 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00285 K10747 - aip:107642653 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00285 03 2781108 2787935 Aip03g00285 03 2781108 2787935 ECH