Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00283 ATGGAAACCAAGGCTGAAGTTGTTTTTTCTTCTGCTGAATCCAGCTCCAAACACGTTTCTCCAATGGAACTTGGAATTGAGAATTTTGGGTGCAAACATTACAGAAGGAGATGCAAGATTAGAGCACCATGTTGTGATGAGGTTTTTGATTGTAGGCATTGCCACAACGATGCTAAGAACTCTGAGGAGATTAATGTTAAGGATCGTCATGATATCCCACGCCATGAAATTAACAAGGTCATTTGTTCTGTGTGTGATACAGAACAAGATGTTCAACAGTACTGCATAAACTGTGGGGTATGCATGGGAAAGTATTTTTGTGGCACTTGCAAATTCTTTGATGATGATGTTTCAAAGAACCAGTACCACTGTGATGATTGTGGCATCTGCAGAACTGGAGGAAAGGATAACTTTTTCCATTGCAAGAAATGTGGGTGCTGCTACTCTAAAATAATGGAAGCTGGTCATCGCTGTGTGGAAAGAGCAATGCATCACAATTGTCCTGTTTGCTTTGAGTATCTGTTTGAGACATTAAGGGATATTACTGTGTTGCCTTGTGGGCATACCATACATTTGGAGTGTGTCAAAGAGATGGAAAGACATCATAGGTACTCTTGTCCGGTTTGCTCCAAATCCATTTGTGACATGTCAAGTTTATGGAAGAAGCTTGATCAAGTGGTATGTGTATCACAATTTTCTCCTTAA 705 0.4014 METKAEVVFSSAESSSKHVSPMELGIENFGCKHYRRRCKIRAPCCDEVFDCRHCHNDAKNSEEINVKDRHDIPRHEINKVICSVCDTEQDVQQYCINCGVCMGKYFCGTCKFFDDDVSKNQYHCDDCGICRTGGKDNFFHCKKCGCCYSKIMEAGHRCVERAMHHNCPVCFEYLFETLRDITVLPCGHTIHLECVKEMERHHRYSCPVCSKSICDMSSLWKKLDQVVCVSQFSP 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00283 234 SUPERFAMILY Zinc hairpin stack 103 160 IPR037275 -
Aip03g00283 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 221 IPR013083 -
Aip03g00283 234 ProSiteProfiles Zinc finger CHY-type profile. 24 100 IPR008913 GO:0008270
Aip03g00283 234 SMART ring_2 167 209 IPR001841 -
Aip03g00283 234 SUPERFAMILY RING/U-box 166 215 - -
Aip03g00283 234 ProSiteProfiles Zinc finger RING-type profile. 167 210 IPR001841 -
Aip03g00283 234 SUPERFAMILY CHY zinc finger-like 28 102 IPR037274 GO:0008270
Aip03g00283 234 ProSiteProfiles Zinc finger CTCHY-type profile. 102 166 IPR017921 -
Aip03g00283 234 Pfam Ring finger domain 166 209 IPR001841 -
Aip03g00283 234 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 229 - -
Aip03g00283 234 Pfam CHY zinc finger 31 112 IPR008913 GO:0008270
Aip03g00283 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 8 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00283 Aip-Chr3 2766112 2768408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00283 29 232 C2H2 Transcription Factor Family AT3G18290 36.667 2.78e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00283 K10144 - gmx:100812709 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00283 03 2766112 2768408 Aip03g00283 03 2766112 2768408 ECH