Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00281 ATGGATTACAAGGAAGACTATTATTTGTCCAACACTAGCAATGATAATTGTAATGTTGTTCATCATGATGCTACCCATCATATAGCCAAGGGAAAACGGACCAAAAGGTTGAGGCTTTTGTGTGGCGGCGCAACCGTCATCATGCCGGCCTCTAGCTGTTCTAGCGCTTCCGGCGATGATCACGGCTCGTTTTCGATTTCTTCCACAACCAATCAAGAGGAAGAAGACATGGCTAATTGCTTGATTCTTCTTGCTCAAGGAGGAGGAGATTCTCATCAAAAACCGCCACAAGTTGATGATCAAGATGAAGATGATGATGGTTGTGGTAACAACAAGAAGAAATTCTCGGAGATTGAAACCGCCACCATAAACAACAACAAGGTTGGTTTCTATATTTATGAGTGCAAGACTTGTAACCGAACCTTCCCTTCCTTTCAAGCCTTGGGTGGTCATAGAGCCAGTCACAAGAAGCCTAAGCTCACAACAATCCCTGCCGCCGAGGACAAGAAACCACCACCACCGTCTCCGCCACCTCCACTGCCTCCCCCACCACCGCAGCAACTTATGATGAAGACCAATTATGACCATCATCTTCATCATAGCCAGCAGATTGAAACTGTCCCTCCAAATAATAATAATCCAATAATTTCTCTACAATTTGGGAGTGGGCAAAAAGGTAATTTCCACGGGAACAACAACAACAAGCCCAACAAGATTCACGAGTGCTCCATATGTGGCTCCGAATTCACATCCGGCCAAGCACTGGGTGGACACATGAGAAGGCATAGGGCTACAGCGGCCGCAGCCGCCAATAGTACTGCTCAGGCCAATGTTGGCCTAAGCAGAATTGAGGCAACTTCTACTGTTATAACTACAACAGTAGAAGTTCAGCCTCGAAATATTCTAGAATTGGATCTCAACCTTCCGGCTCCGGAGGAAGACCTCCGGGAGCCAAAGTTTCAGTTTGCTACCGCAGCAACTAAGAAATCTATGGTGCTCTCAGCTGCTCCGGCTTTGGTGGACTGCCATTATTAG 1035 0.4667 MDYKEDYYLSNTSNDNCNVVHHDATHHIAKGKRTKRLRLLCGGATVIMPASSCSSASGDDHGSFSISSTTNQEEEDMANCLILLAQGGGDSHQKPPQVDDQDEDDDGCGNNKKKFSEIETATINNNKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTTIPAAEDKKPPPPSPPPPLPPPPPQQLMMKTNYDHHLHHSQQIETVPPNNNNPIISLQFGSGQKGNFHGNNNNKPNKIHECSICGSEFTSGQALGGHMRRHRATAAAAANSTAQANVGLSRIEATSTVITTTVEVQPRNILELDLNLPAPEEDLREPKFQFATAATKKSMVLSAAPALVDCHY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00281 344 MobiDBLite consensus disorder prediction 149 190 - -
Aip03g00281 344 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Aip03g00281 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Aip03g00281 344 SMART c2h2final6 240 262 IPR013087 -
Aip03g00281 344 SMART c2h2final6 133 155 IPR013087 -
Aip03g00281 344 Pfam C2H2-type zinc finger 240 264 - -
Aip03g00281 344 Pfam C2H2-type zinc finger 133 158 - -
Aip03g00281 344 PANTHER ZINC FINGER PROTEIN ZAT5 21 344 - -
Aip03g00281 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Aip03g00281 344 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 21 344 - -
Aip03g00281 344 MobiDBLite consensus disorder prediction 167 188 - -
Aip03g00281 344 SUPERFAMILY beta-beta-alpha zinc fingers 132 262 IPR036236 -
Aip03g00281 344 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Aip03g00281 344 Gene3D Classic Zinc Finger 223 295 - -
Aip03g00281 344 MobiDBLite consensus disorder prediction 86 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00281 Aip-Chr3 2737167 2738541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00281 27 344 C2H2 Transcription Factor Family AT2G28200 39.577 2.13e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00281 zf-C2H2_6 2.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00281 - - aip:107629278 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00281 03 2737167 2738541 Aip03g00281 03 2737167 2738541 ECH
Aip03g00281 03 2737167 2738541 Aip09g02755 09 126803185 126804896 ECH
Aip08g00577 08 5029550 5030663 Aip03g00281 03 2737167 2738541 ECH
Aip06g01832 06 51970736 51971904 Aip03g00281 03 2737167 2738541 ECH
Aip02g03305 02 109778426 109779307 Aip03g00281 03 2737167 2738541 ECH
Aip08g00577 08 5029550 5030663 Aip03g00281 03 2737167 2738541 PCT