Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00279 ATGGCGGCTGCATCATCTGATGAAGGTGGTGGTGGTGGTGGATTCCCACCTATGACGCAATACTCATCATCATCATCATCCACCATGTACCATTATCTCTCAGTTCTCAATGATAAAATCAACGAGTTGCAGTCCCTTGTGGGGGTTGTAGCCTCCCCCAATCGGCACCACTCATCAATTCCTTGTTCTTCCTATTCCATGGCGATATCCACCATGACCTCCACCATCCAAGATATCATACTTGCTTCCTCTTCATTCAGACTCACCTTCCAACAACACATCAATAGTTATAACAATCCATCATCAGGTAACATTATTGCTACTTCTACTTGCAATAATCAACAATTAGAATTGCACCCTCATCACCACCAATCTTATGATTATAATAATAGTAATATCATTACTAGTAGTGTTGCTAATGATGAACCTGCACAAGAACAAGACGAAGAAGAAGAAGAAGAAACACTCCATTGGTTTTCTGAACCCTACAACAATAACAATAGTACTGTTATTTATTGTGATGATAACAATAATACTAAGGATGATGATGGAGAAGAAGAAACAGATATAATTGAGTTGGATGCTGCTGATTTGTTAGCAAGCTACACACATTTCTGCCAAGTATGTGGGAAAGGATTTAAGCGCGAAGCGAATCTGAGGATGCATATGAGGGCTCATGGAGATGAATTCAAAACCAGTGAAGCCTTGAAGAACAATAACAATAACAAGAAGATGATGATGAAGAAGAAGAAGAAGTATTCGTGCCCTGAAGATGGGTGCAGGTGGAACAAGAATCATGCCAAGTTTCAGGCACTGAAATCAATGGTGTGTGTGAAGAATCACTACAAGAGAAGCCATTGCCCAAAGATGTATGTTTGCAAGAGGTGCAACAACAAGAACTTCTCTCTGCTCTCTGATTTGAGGACCCATGAGAAGCACTGTGGTGATCCCAATAAATGGTTGTGTTCTTGTGGAACCACTTTCTCAAGAAAAGACAAGCTCTTCGGACATCTTGCTTTGTTCCTTGGCCACTCCCCAGTTCATGCTGCTACTCAAGGATCATAA 1065 0.4103 MAAASSDEGGGGGGFPPMTQYSSSSSSTMYHYLSVLNDKINELQSLVGVVASPNRHHSSIPCSSYSMAISTMTSTIQDIILASSSFRLTFQQHINSYNNPSSGNIIATSTCNNQQLELHPHHHQSYDYNNSNIITSSVANDEPAQEQDEEEEEETLHWFSEPYNNNNSTVIYCDDNNNTKDDDGEEETDIIELDAADLLASYTHFCQVCGKGFKREANLRMHMRAHGDEFKTSEALKNNNNNKKMMMKKKKKYSCPEDGCRWNKNHAKFQALKSMVCVKNHYKRSHCPKMYVCKRCNNKNFSLLSDLRTHEKHCGDPNKWLCSCGTTFSRKDKLFGHLALFLGHSPVHAATQGS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00279 354 PANTHER OS08G0562300 PROTEIN 22 350 - -
Aip03g00279 354 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g00279 354 Gene3D Classic Zinc Finger 200 261 - -
Aip03g00279 354 MobiDBLite consensus disorder prediction 139 163 - -
Aip03g00279 354 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Aip03g00279 354 SUPERFAMILY beta-beta-alpha zinc fingers 203 228 IPR036236 -
Aip03g00279 354 Pfam C2H2-type zinc finger 204 226 - -
Aip03g00279 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Aip03g00279 354 SMART c2h2final6 291 313 IPR013087 -
Aip03g00279 354 SMART c2h2final6 204 226 IPR013087 -
Aip03g00279 354 SMART c2h2final6 253 286 IPR013087 -
Aip03g00279 354 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 350 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00279 Aip-Chr3 2724531 2725595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00279 26 352 C2H2 Transcription Factor Family AT5G22890 47.590 3.03e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00279 zf-C2H2_6 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00279 - - gmx:100802399 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00279 03 2724531 2725595 Aip03g00279 03 2724531 2725595 ECH
Aip08g00578 08 5045674 5047977 Aip03g00279 03 2724531 2725595 PCT