Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00273 ATGAGTAGCCAGCACAGAGGTGTTTCTTCTGGGGAAACCAGGGAAGAGCAATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGACGGCTTTGTTGTTAACCAGGGTGAGGGCCAGACTGAACATTTTCGTAGGGGCATCCGTAAATTATGCGGACGACAGGTTATGCTTGATATGCTGAAGAAGGCTGAGATGCAAAGGCAAAGAGAAATTCAAGAGTTGTTGAACCATCGGGCAGTATCTCATTTCCCTCATCGTAATCGCATTCAGGCATTGCTTAGAGGCTGGTTCTTGAGAAATGATAGATCTGTTGATAATAACAGGTCCACTTCTGTTGCTGAAAGTGAACTAGGTTTATTGAGGCAAAGACAAACTGTATCAGAACTAAGGGAAGGATTCTTCTCCAGAAAGGATAAAACTGGTTGCAGTCAAGCAACTGGCAACGTATCTGATATGTCACCTAACAGTGATATTGAATTTAATACGATTGAACAAATCGGTGCTAGCAATTCACATGTGGTCCCCACTCTGAATTCTGAACGGTCTGAATCTAATACCAGAAGAAATGATGGACTTGAGATGTTGGGGGGCCAGAATTGTTTGCAGGAAACAATGTCTGACAATCCAGATCAACAAGATACTACTGGTCATGTAGAAGGAGCTCAGTTACAGAATTTGCAATTTGAACCAGTAAATCAGCTATCATCCAGTGTGGCCGTTGAAAGAAGAGATAGCACTGGGCAAAATGTTGATGTGAACCATGTGATGCCAGTTGAGGATACTGCTAGTGATCATGTGCAGCAAAGTTTGCAAACTGAAAATCCATTTCAGAGTGCTATGCAGGAATTCACTGAGGCATACAATGATCAACTTCGATCGGGTGATATAAGTAATGGTGTAAATGACTCATCAAACCCCAACCACCCCATGGAGGAAAATATTGTTGATATGAATCGGAATGAACCCGCTGCTCTGGTAGGAGAACAGCTGGAAGAAGATATTGAAAATGAAGGAAGTGTCTGGAATCAGAGTAACCGTGAATGGAGAAATAGCACGGAGGAAGGTGTAGATGATAATCAAGTGAGCAGTACATCAATGCAGTGGCCTGAAAATGAATTTGGAGATGAGGATGGAGAAAACTCTCGGCTGCAAGAAGGTCCTGAAGTCTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTAGAAAATTGGTTGGGGGCTCCTTCTGATCTTGAAAGTGCTCCAGTCGGTAGGATTCATGGATTTTACTTTCCAGACGACGACAATGTATATAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCCAACCTCCTCCGTAGCAGTTTCCGCGATAGTCTTGACCAGTTGATACAATCATATGTTGCAAGGCAAGGCCATAATCAGATGGAGTGGGAGCTACAAGAAACAACCCCGTCTTCTGCCTCTGTGGAACAGGACCTTGAACAGCAGAGTAGGGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTCCACATGACCTACCTTCTTTACCTATTCCTCCTCCTTTGCCTCTTTGGGACCGGCACCCTCGCCGTGACAGCTGGTCACAGTCGCAGAGTGACATGAATAATCAGCATCTAGGAGGAATTGATTGGGAGGTTGTCAATGACTTGAGAATTGACATGTCTAGACTGCAGCAAAGGATGAACAATATGCAAAGAATGCTGGAGGCTTGTATGGATATGCAGCTGGAGTTGCAGCGTTCAATAAGGCAAGAAGTTTCTGCTGCCCTAAATCGTTCGACTGGTTCATCAGGAACAAATGAGTTCGAGTCATCAGATGAATCCAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCTAAATGTGCCAATGAGTTGCTTCAAAGTAAAAGGAAGTGCCCGATGTGTCAAGCCCCCGTGGTGGAGGTTATACGTGCTTATTCTATACTATAG 2028 0.4408 MSSQHRGVSSGETREEQSAEIGTQIERVRDGFVVNQGEGQTEHFRRGIRKLCGRQVMLDMLKKAEMQRQREIQELLNHRAVSHFPHRNRIQALLRGWFLRNDRSVDNNRSTSVAESELGLLRQRQTVSELREGFFSRKDKTGCSQATGNVSDMSPNSDIEFNTIEQIGASNSHVVPTLNSERSESNTRRNDGLEMLGGQNCLQETMSDNPDQQDTTGHVEGAQLQNLQFEPVNQLSSSVAVERRDSTGQNVDVNHVMPVEDTASDHVQQSLQTENPFQSAMQEFTEAYNDQLRSGDISNGVNDSSNPNHPMEENIVDMNRNEPAALVGEQLEEDIENEGSVWNQSNREWRNSTEEGVDDNQVSSTSMQWPENEFGDEDGENSRLQEGPEVWQEDGGFQEAVENWLGAPSDLESAPVGRIHGFYFPDDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVARQGHNQMEWELQETTPSSASVEQDLEQQSRDQIVGQEGTVNSPHDLPSLPIPPPLPLWDRHPRRDSWSQSQSDMNNQHLGGIDWEVVNDLRIDMSRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTNEFESSDESKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSKRKCPMCQAPVVEVIRAYSIL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00273 675 ProSiteProfiles Zinc finger RING-type profile. 623 662 IPR001841 -
Aip03g00273 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 673 IPR013083 -
Aip03g00273 675 SUPERFAMILY RING/U-box 622 668 - -
Aip03g00273 675 CDD mRING-HC-C3HC5_NEU1 623 661 - -
Aip03g00273 675 PANTHER PROTEIN, PUTATIVE-RELATED 1 674 - -
Aip03g00273 675 Pfam Zinc finger, C3HC4 type (RING finger) 620 667 - -
Aip03g00273 675 Coils Coil 552 579 - -
Aip03g00273 675 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g00273 675 MobiDBLite consensus disorder prediction 337 383 - -
Aip03g00273 675 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 674 - -
Aip03g00273 675 MobiDBLite consensus disorder prediction 337 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00273 Aip-Chr3 2685848 2689414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00273 623 669 C3H Transcription Factor Family AT3G06140 42.553 1.02e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00273 - - gmx:100801329 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00273 03 2685848 2689414 Aip03g00273 03 2685848 2689414 ECH
Aip08g00582 08 5091424 5095125 Aip03g00273 03 2685848 2689414 ECH
Aip08g00581 08 5089784 5091386 Aip03g00273 03 2685848 2689414 PCT