Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00272 ATGCTCCTTCAAAAGTTACTAATCTTCGTTATCCTCACAAGAGAAAGATACACATACATGATGATGATGATGGAATTCCAGAACCGCAGAGTGCTACTACTCCTCAACAAGGATGTTCCAATATCTTCACCGCCGCCGCCGCAGCCGCCAGCGTCGTCATCACCGGTGATGGCGATGTATGGATCATCGTCATTGCAAGTACCAGCTCGTCCGATCTTCAGTTCAAACGTAGCCTACGCCTTCATCATCCTCCTCACCACGCTGTTCTTCCTGGCCTTCATCCTCCTCTTCCTCCGCCAATTCTCGTCGTCCGGCAGCAGAAGCCGTTGCTCGGAGGAAACGACGGAGAAGTGGGCGCTGCCGACAGTTGCGTACAGTAGGGGGAAGAGGAAGGTGAAAGAGCAGGAAGAGGAGTGCGTGATATGTTTGGAAGAGCTTCGCGAGGGTGAAACGGTAAAAATGATACCTCACTGCAAGCACGTGTTCCATCCTAACTGCATTGACACGTGGCTCCTCACTCACGTGACATGCCCCGTGTGCAGATGCCCCAAGGTTTGTGAAGAAGAAGAAGAGAATGATGAGGGAGAAACAAGAATAAGAAGAGAGGTAGTTGAAATTCAGTTACAAGAGTCTCAAACTGAAAGAGCGGTGAGTAGTGATGAGAGAAGAGAAGTAACTGGGTTGAGGAGATCACTCAGCTTCTGA 705 0.4993 MLLQKLLIFVILTRERYTYMMMMMEFQNRRVLLLLNKDVPISSPPPPQPPASSSPVMAMYGSSSLQVPARPIFSSNVAYAFIILLTTLFFLAFILLFLRQFSSSGSRSRCSEETTEKWALPTVAYSRGKRKVKEQEEECVICLEELREGETVKMIPHCKHVFHPNCIDTWLLTHVTCPVCRCPKVCEEEEENDEGETRIRREVVEIQLQESQTERAVSSDERREVTGLRRSLSF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00272 234 MobiDBLite consensus disorder prediction 210 234 - -
Aip03g00272 234 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Aip03g00272 234 CDD RING-H2_PA-TM-RING 138 181 - -
Aip03g00272 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 73 214 - -
Aip03g00272 234 SMART ring_2 139 180 IPR001841 -
Aip03g00272 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 185 IPR013083 -
Aip03g00272 234 SUPERFAMILY RING/U-box 133 184 - -
Aip03g00272 234 PANTHER RING FINGER DOMAIN-CONTAINING 73 214 - -
Aip03g00272 234 Pfam Ring finger domain 138 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00272 Aip-Chr3 2683312 2684440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00272 73 234 C3H Transcription Factor Family AT2G27940 31.980 7.56e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00272 - - aip:107634124 356.681