Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00256 ATGGAGCCACCGGTTGTTAGATCGAGAGGGAGGCCGCGGAAGCGTAGAAGAAAAGAGGAAGAAATGGAAGCTCTGGAAGCAAAGAGGCAAGCCTTGGCAACCAGATCGATAGCGTTGGTTGGACGATTCGTGCTGAAGGAGTTCCCGAAAATCGGTGTTTTTCTCGGTAAAGTTGTGTACTACGAGTGTGGCTTGTATAGAGTTAGTTATGAGGACGGTGATTTCGAGGATTTGGATAGTGGTGAGGTTCGTGCTGTTCTACTAAATGACAGTGATTTTGATGATGATTTGACTAAGAGGAAGGGTAAATTGGAGCAATTAGTGTTGAAGAATAGTGTAAAGGTTCAGGCTAAGTCGGTGAAGGCTTCTGATGAGATGAATAAAGATGAATCCAAGGTTGATGGACCTGTTTCGGGAGAACTTAACGGTGAAAACGGTGAGGAACAAGCTGAAGGTGGCGATGATTTGTTGAGTGATGATTATTCTGATTCAGATGCTGAGGCAGTGCCTGCCGTGCCACCGCGGCCGCCTTTGTTGCAGTTGCCACCATCGTCAGGGACTATTGGTGTGCCGGAGCAGTGTGTTTCGCACCTGTTTGCTGTTTATGGTTTCTTGAGATCATTTAGCACTAGGTTGTTCCTGGCACCGTTTACTTTAGATGATTTTGTTGGTTGTCTTAATTGCCGAGTTGCTAACAGCTTGATTGATTCTATTCACGTCTCCCTATTGCGGGTATTGAGGCATCATCTTGAATCCGTTTCATCTGAAGGCTCAGAGCTTGCATCGAAATGCCTTAGTTGTTGTATTTGCAGGTGCAATGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTGATTCAGTATTTATTAGTTAATGGACACACAAAAGGACCTGAATGGAAAGGGTTTTATGATGAGGCTTTTGCTTGCGAGTATTATTTATTGCCTGTAAGTAGGAAGTTAATGATATTGCAAAAACTCTGCGATGATGTTTTGGATTCAGAGGAGCTAAAAGCTGAAATGAACATGCGGGAAGAATCAGAGGTTGGGGTGGATTATGACGCAGAAGATATCATTGCTGCAGAAAATGGGCCTGGAAAAGTCCTGCCAAGACATGCCAATACTGCTTGTGAGGATAAAGGAGCCATGAAGATAGTTTTGGCATCAAATTTTGTGAACCAACATGTTAACCCTAATAATTCCAATTCCAGAAATGCAGGAAACGTTGGTGATGGCGATGATAGAAATGGAGATGAATGTCGTCTTTGTGGTATGGATGGGACCTTGCTTTGTTGTGATGGGTGCCCCTCTGCTTATCACTCCAGGTGTATTGGTGTTTCGAAAATGCATATACCAGAAGGACCGTGGTATTGTCCAGAATGCAAGATTAACATGATTGGGCCAACAGTTGCAAAGGGAACATCACTTAGAGGTGCTGAAATATTTGGAATGGATTTGTACGGGCAGCTTTTCATGAGTTCTTGCGACCACTTATTGGTGCTCAATGTCAACAATGATGAATTCTGTCTTAAATATTACAACCAGAGTGACATTCCTAATGTTATCCAAGTGCTCTGCGGATCCTTGCAGCATAGACCAATATACTATGATATTTGCATGGCAGTTATGCAATATTGGAATATTTCTGAAAGAGTCTTGCCTCTTCCTCCTCCGTCAAGTGAAGATGGTCATAAGCCTGTTAGTTTGGTGAATGGAGAGTACTCTCACACTTTGAGCTTGATTTATAGTGGCAATGTAGTCCCTTCACGTGATATCTCAACAACTAACACTGTAAATCAATGTCCTGAAAGCAGCGGTAATGAGCTCCCTACCACAAATATGAAGCTTCCTCAGGAAACTAGGATGGTGTCACTAATGTCAAATGATTCTGGGTCTGTTTCTGTTAGTAATCAGTCTGAGTTGAACTATCGAAGTTCTGTCAATGGGTTAACTGTGGTGGCTTCTTCACGCTCTTTGATAAACAGCCAATATAGTAATAATGCCCATTCAAATGATATTGTACTGCCAGTGAACTTCTCTCTGGAAACCAAAGAGAGCACCCGAGTTGGTTTTGGAAAGGTGGAACACAAAACAACTAACAATGTTGGGTACATGGGTTTGTCCTATAAACCTTTGTCATACATTAATAACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCCAAATTGGCCGTTCTATCCTCTGAGGAATCTAGGTCAGAGGGTCATGTTTCCGACAGTCAGAAGAAAACGATAGCTCAGATCACTTATTTGCAAGCAAAAGCATTCTCACAAATAGCTTCACGTTTCTTTTGGCCAGCTACTGAAAAGAAGCTAATGGAGGTGCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCCCTTATAAATGCCACAAAAAGTGCGCTGAAAGTTCTTGCTGGTTTTCCTCCACTAAGGAGTGGAGAGGGAATCCTTCCTAGTATTGCAACATACATTTTATACATGGAGGAATGTTTACATGGTTTAATAGTTGGGCCCTTTCTAAGTCCAAGTTATAGAAAGCAATGGCGAATGCGGGTTGAACAGGCCACAACATTTAGCTCTATCAAACCACTCTTGCTTGATCTTGAGGAAAATATTCGCATGATTACTTTCTGCGGGGATTGGCATAAGTTGATGGATGATTGGTTGGTTGAGTTTTCTATGATTCAAAGGTCTGCATCTGCTCTTGGAACAACACAGAAACGTGCACCAAGTGGGAGGCGTTACAAAAAACGCTCAGCTACTGAAGAACCTACAGCTGATGGTTGCCATGAAAGCCTTGAGTGGTGGCGGGGTGGGAAATTCACCAAGTTTATATTCCAAAAAGCTGTTTTGCCAAGATCCCTGGTCAGGAAAGCTGCACGCCAAGGTGGTTCGAGGAAAATCTCTGGCATTTTCTATGCTGATGGATCTGAAATCCCTAAAAGGACCAGACAGTTTGTGTGGAGAGTTGCAGTACAGATGTGTAAGACTGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATATCAGATGGAGTGATCTAATTCGTCCAGAGCAGAATATTCAGGATGGTAAAGGTCAAGAAACTGACGCTTCTGCTTTTAGAAATGCAAATATTTGTGATAAAAAGCTTGTAGAGGGGAAAACTTGTTACGGAGTAGCATTTGGGAGCCAAAAGCATCTTTCTACTCGTTTAATGAAAAATGTTATTGAAATTGAGCAAGGTATAGAAGGAAAGGAAAAGTATTGGTTTTCCGAAACACGCATTCCTTTATATTTGGTGAAAGAGTATGAAGAAAGCAATGGAAACGGACCATCTGTTGGTGAGCACTTGAATACTGCATCACAACAATTGCTCAGTCGGTGGTTGAAAGCATCCCGCAAGGATATTTTTTTCTACCTTACCTGCAAGAGAGACAATTTGGACATGTTCTTGTGTTCTGTATGTCATACTGGTGTTCCATTAAGGAATGCACTCAAGTGCAATACTTGTCAAGGTTTTTGTCACGAGGGCTGTTCCCTAAGGTCAACAATCTTCACAAATAAGAAAGTTGAGTACTTGACCACATGCAACCAATGTTATCATGCCAAGTTCCTTGCTCAAAAGGAGACCAGTAATGAATCTCCAACCAGCCCCTTACTCTTACAAGGACGTGAAAACAACTCTCTTACTATCCTAAAGGGATTAAAGTCTAAATATTCTGATCTAGCACAGAAGTCTGCCAAGGCAAAGGATAGCCGTCCAGAAGCAAAACAAGCAAAACAAGTTGCTTCAATGACAGTTTTGAAGGAAGCAAAGACTTCCACCAAGTCAAAGGATAGTCATCCAGACAGAAAACAACTTGCTTCTGGTTCCAGCTCGGCAACTGCAACCCATCGTAGGAATTGTTCTTGGGGTGTGATATGGAAGAAGAAAAATATTGATGATACAGGCGATGAATTTAGGCTCAAAAACATACTTTTAAAGGGAGCTTCAGGAATTCTTCAAGAGCCACCAATTTGTCACTTGTGCCGTAAGAAATACTGTTCCGATCTGATGTACATTCACTGTGAGTCATGCTCAAATTGGTATCATGCTGAAGCTGTTGAACTCGATGAGTCCAAAATTTTTGATGTACTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGATTGTCCTTATGCTGATACTAAGCGCAAGACACAAGAGGGTAAGAGGACAAGGACTTCAAAGAAAGAGTATTCTGGTCCAGATTCTGATTCTGAAAAATTTTCTGATACAGAACCTAAGTTAGAGGATGCTGAGTGGAGTACTCTCTCTGGCCCTGGGCCTCGGAAACTACCAGTGAGACGGCATGTTAAACGTGAGGGGGACTGCGATGGATTTTACGTAGAGAAACCGTTGTATGATGAAACTTTGGCACATAATGAAGCGGGTGATACGTACAAACCCGAGCCTTTAGACTATGACTCTGTCGTGCCAAATGATAGCAATCTGCTTAATGAAGCGGAAGGTTCACAGTATGAATTTGCGGACTTTGAACCTCATACCTACTTCTCTGTAACGGAACTGCTGCTTCCAGATGATAGTAGCCAGCTTGAGGGAGCTGATGCATCTGGTGAGTTGTCAGGATATTTGGGGAATTCTTGTACACAAGTTCCTGAAGAATGCGGTGTAACTTTAGATGACAAATCAGAACCTGCCCTATCATTTGAAGACGCTGTTTATAGTTGTTGGCAGTGCGGGCAAATGGAACCAGCCCCTGATCTGTGTTGTGAGATTTGTGGGATTTTTATTCACAGTCAATGCTCCCCTTGGGTTGAGTCACCATCAAGGCTTGGAAATTGGAGGTGTGGCAATTGCCGGGAATGGCAATAG 4932 0.4264 MEPPVVRSRGRPRKRRRKEEEMEALEAKRQALATRSIALVGRFVLKEFPKIGVFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRAVLLNDSDFDDDLTKRKGKLEQLVLKNSVKVQAKSVKASDEMNKDESKVDGPVSGELNGENGEEQAEGGDDLLSDDYSDSDAEAVPAVPPRPPLLQLPPSSGTIGVPEQCVSHLFAVYGFLRSFSTRLFLAPFTLDDFVGCLNCRVANSLIDSIHVSLLRVLRHHLESVSSEGSELASKCLSCCICRCNDWGLLDALTWPVFVIQYLLVNGHTKGPEWKGFYDEAFACEYYLLPVSRKLMILQKLCDDVLDSEELKAEMNMREESEVGVDYDAEDIIAAENGPGKVLPRHANTACEDKGAMKIVLASNFVNQHVNPNNSNSRNAGNVGDGDDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVSKMHIPEGPWYCPECKINMIGPTVAKGTSLRGAEIFGMDLYGQLFMSSCDHLLVLNVNNDEFCLKYYNQSDIPNVIQVLCGSLQHRPIYYDICMAVMQYWNISERVLPLPPPSSEDGHKPVSLVNGEYSHTLSLIYSGNVVPSRDISTTNTVNQCPESSGNELPTTNMKLPQETRMVSLMSNDSGSVSVSNQSELNYRSSVNGLTVVASSRSLINSQYSNNAHSNDIVLPVNFSLETKESTRVGFGKVEHKTTNNVGYMGLSYKPLSYINNYMHGDFAASAAAKLAVLSSEESRSEGHVSDSQKKTIAQITYLQAKAFSQIASRFFWPATEKKLMEVPRERCGWCFSCKAPVSSKRGCMLNHALINATKSALKVLAGFPPLRSGEGILPSIATYILYMEECLHGLIVGPFLSPSYRKQWRMRVEQATTFSSIKPLLLDLEENIRMITFCGDWHKLMDDWLVEFSMIQRSASALGTTQKRAPSGRRYKKRSATEEPTADGCHESLEWWRGGKFTKFIFQKAVLPRSLVRKAARQGGSRKISGIFYADGSEIPKRTRQFVWRVAVQMCKTASQLALQVRYLDFYIRWSDLIRPEQNIQDGKGQETDASAFRNANICDKKLVEGKTCYGVAFGSQKHLSTRLMKNVIEIEQGIEGKEKYWFSETRIPLYLVKEYEESNGNGPSVGEHLNTASQQLLSRWLKASRKDIFFYLTCKRDNLDMFLCSVCHTGVPLRNALKCNTCQGFCHEGCSLRSTIFTNKKVEYLTTCNQCYHAKFLAQKETSNESPTSPLLLQGRENNSLTILKGLKSKYSDLAQKSAKAKDSRPEAKQAKQVASMTVLKEAKTSTKSKDSHPDRKQLASGSSSATATHRRNCSWGVIWKKKNIDDTGDEFRLKNILLKGASGILQEPPICHLCRKKYCSDLMYIHCESCSNWYHAEAVELDESKIFDVLGFKCCKCRRIKSPDCPYADTKRKTQEGKRTRTSKKEYSGPDSDSEKFSDTEPKLEDAEWSTLSGPGPRKLPVRRHVKREGDCDGFYVEKPLYDETLAHNEAGDTYKPEPLDYDSVVPNDSNLLNEAEGSQYEFADFEPHTYFSVTELLLPDDSSQLEGADASGELSGYLGNSCTQVPEECGVTLDDKSEPALSFEDAVYSCWQCGQMEPAPDLCCEICGIFIHSQCSPWVESPSRLGNWRCGNCREWQ 1643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00256 1643 MobiDBLite consensus disorder prediction 1262 1310 - -
Aip03g00256 1643 MobiDBLite consensus disorder prediction 120 183 - -
Aip03g00256 1643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1344 1421 IPR013083 -
Aip03g00256 1643 CDD PHD2_CHD_II 422 463 - -
Aip03g00256 1643 ProSiteProfiles DDT domain profile. 192 252 IPR018501 -
Aip03g00256 1643 MobiDBLite consensus disorder prediction 1413 1451 - -
Aip03g00256 1643 SMART PHD_3 1167 1216 IPR001965 -
Aip03g00256 1643 SMART PHD_3 421 464 IPR001965 -
Aip03g00256 1643 SMART PHD_3 1355 1403 IPR001965 -
Aip03g00256 1643 SMART PHD_3 1595 1640 IPR001965 -
Aip03g00256 1643 SUPERFAMILY FYVE/PHD zinc finger 1352 1408 IPR011011 -
Aip03g00256 1643 Pfam DDT domain 193 248 IPR018501 -
Aip03g00256 1643 MobiDBLite consensus disorder prediction 1413 1466 - -
Aip03g00256 1643 Pfam PHD-finger 422 464 IPR019787 -
Aip03g00256 1643 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g00256 1643 SUPERFAMILY FYVE/PHD zinc finger 412 467 IPR011011 -
Aip03g00256 1643 CDD PHD_SF 1355 1402 - -
Aip03g00256 1643 MobiDBLite consensus disorder prediction 121 135 - -
Aip03g00256 1643 ProSiteProfiles Zinc finger PHD-type profile. 419 466 IPR019787 -
Aip03g00256 1643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 468 IPR013083 -
Aip03g00256 1643 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1450 1640 - -
Aip03g00256 1643 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1444 - -
Aip03g00256 1643 ProSitePatterns Zinc finger PHD-type signature. 422 463 IPR019786 -
Aip03g00256 1643 CDD PHD_SF 1595 1639 - -
Aip03g00256 1643 Coils Coil 15 35 - -
Aip03g00256 1643 SMART testlast3 192 252 IPR018501 -
Aip03g00256 1643 PANTHER PHD FINGER FAMILY PROTEIN 1450 1640 - -
Aip03g00256 1643 PANTHER PHD FINGER FAMILY PROTEIN 1 1444 - -
Aip03g00256 1643 MobiDBLite consensus disorder prediction 922 942 - -
Aip03g00256 1643 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 312 344 IPR028942 -
Aip03g00256 1643 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00256 Aip-Chr3 2549823 2558496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00256 27 1643 PHD Transcription Factor Family AT5G35210 40.250 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aip03g00256 DDT 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00256 - - ahf:112736410 3207.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00256 03 2549823 2558496 Aip03g00256 03 2549823 2558496 ECH