Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00255 ATGGAGCAACACAACCCTCAACAACCCTCTAACCCCATTTTGGACCACACTAGCTCTTTCAACAACAACACTATCGTGCCGAACGAAGCAAAGGTGGCGGCGGTGCCTGATTCTGGAGGTTCGGACTCGGTGTCAAGACCCGAAGCTGGAGGTTGGGAGCAGCATCATCATGGAGTGGTGGTTGTGAAGAGGGGGAGAGGGAGACCTCGAAAGTACGTCGACACAGACGGCAGCGGGGGAGGGATGATGACGTCTCCGACGTCAGAGCCGCCGCCTTCGGGGTTTGCGGAAGCGGTAGCCTCCCAACTTGAGAGCCCTGCGGTGAAGAGGGGAAGAGGAAGGCCACGTGGTTCTGGAAAACTGCAGATTCTGGCCTCCATTGGTGGGTTTGTTGCAGAAACAGCTGGTGGAAGCTTCACACCTCATGTGATGATTGTTGGTACTGGAGAGGATGTGGTAAGTAGGATATTGTCATTTTTCCAAAAAGGCCCTCGTGCTGTTTGCATACTTTCAGCTACTGGTTCTGTGTCTAGTGTTGTAATTCGCCAACCTGGTGGTCTATTGAGATATGAGGTAACTATCAACAATAAGAAAGACATTGTTTTTCTTATTCTTTCCCAATTGATTTTGTGTTACATATATATACAGGGTAGGTTTGAGATTTTATCTTTATCTGGATCATGCACCTACACCAATGGCACTGGTAATGCATATCGCAAAGATGGCATGTTGAGTGTTTCTCTTGCTAAACCTGATGGCAGGGTTTTTGGTGGTGGCATTGAGAACTCTTTGATTGCTGCTGCCCCTATTCAACTTGTTTTGGCCACTTTCAAGCAAAACATCAGCAATCAAATCAAGAAGAGGTACTCATCTGACCCTTCTTCTGATGGTGTCCCTTATGCTGCTGCTGCCGCTGTTGCTGTCATGCCGGATATTCCAAATTCCTCAAGGGGTAGCCACAAAGTTCTTAAGTTGTCATTGCAAGAACAAAGTTTCCCTTTACCACCAGGAACAACAAATGCAGTTCAAGATGGTGTCACAATTGTAACAACTAATGACATAGCAGATAATGTGACTCCTACAACAACTAATGGGGTGTCAAATAATGTCATTGCTGAAGATCTCAACATGCATTCTTCTTCAATCGAGGATGCTATTGACCTTGACCAAACAGCCTCACCAGCGGATGTGGATACTAATTAA 1203 0.4655 MEQHNPQQPSNPILDHTSSFNNNTIVPNEAKVAAVPDSGGSDSVSRPEAGGWEQHHHGVVVVKRGRGRPRKYVDTDGSGGGMMTSPTSEPPPSGFAEAVASQLESPAVKRGRGRPRGSGKLQILASIGGFVAETAGGSFTPHVMIVGTGEDVVSRILSFFQKGPRAVCILSATGSVSSVVIRQPGGLLRYEVTINNKKDIVFLILSQLILCYIYIQGRFEILSLSGSCTYTNGTGNAYRKDGMLSVSLAKPDGRVFGGGIENSLIAAAPIQLVLATFKQNISNQIKKRYSSDPSSDGVPYAAAAAVAVMPDIPNSSRGSHKVLKLSLQEQSFPLPPGTTNAVQDGVTIVTTNDIADNVTPTTTNGVSNNVIAEDLNMHSSSIEDAIDLDQTASPADVDTN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00255 400 MobiDBLite consensus disorder prediction 1 94 - -
Aip03g00255 400 ProSiteProfiles PPC domain profile profile. 136 304 IPR005175 -
Aip03g00255 400 PANTHER DUF296 DOMAIN PROTEIN 215 349 - -
Aip03g00255 400 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 215 349 IPR039605 GO:0003680
Aip03g00255 400 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Aip03g00255 400 SMART AT_hook_2 63 75 IPR017956 GO:0003677
Aip03g00255 400 MobiDBLite consensus disorder prediction 1 28 - -
Aip03g00255 400 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 191 IPR039605 GO:0003680
Aip03g00255 400 CDD DUF296 140 277 IPR005175 -
Aip03g00255 400 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 280 - -
Aip03g00255 400 Pfam AT hook motif 109 119 IPR017956 GO:0003677
Aip03g00255 400 Pfam AT hook motif 63 74 IPR017956 GO:0003677
Aip03g00255 400 PRINTS AT-hook-like domain signature 63 73 IPR017956 GO:0003677
Aip03g00255 400 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Aip03g00255 400 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 278 IPR005175 -
Aip03g00255 400 Gene3D - 141 292 - -
Aip03g00255 400 PANTHER DUF296 DOMAIN PROTEIN 25 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00255 Aip-Chr3 2512102 2518707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00255 61 323 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 36.264 5.96e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00255 - - aip:107632385 680.633