Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00242 ATGAATAACAGAGACAGTGAAACTTCAAACCCTATCGATGGCGGAACAAAGAAGCCCAAGGTGGTTGTTATTACGGGCCCCACCGCCTCCGGCAAGTCCAAGCTCGCCGTCGATCTGGCCTCACACTTTCCCATTGAAGTCATCAACGCCGACTCCATGCAAGTCTACTGTGGTCTCGACGTCCTCACCAACAAACTCCCTCTCTCCCAACACAAAGGGGTGCCGCACCATCTCTTAGGTACCGTAAACCCAAACGTTGAATTTACAGCTAAAGTGTTTAGGGATTCTGCTATTCCGATCATAGATGAAATACTAGCTCGCAATCACTTGCCTGTTATAGTTGGGGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCATTTCTCCTAGACGATTTGGCAGATTATATGAACGAAGGCTGTTATGGTGATCCATCTGGTATTTTGATATTCAGTGTCCTAAAATATTTTCTTTTTTCTTTTCCCATTCAGTTCCATATTTTCTTAGGATACTATATCTGTAATTTTTCAGGTGCCACACGGTCTGATATGAGTTTCCCCGCCGATAATGACAATTCAAGTAATGGTTATGACCTGCTTAAAGAGATCGATCCAGTTGCTGCAAATAGAATCCATCCAAATAACCATAGAAAGATCAATCAATATATTAATTTGTATTCACGTACTGGTGTTGTTCCTAGCAAAGTATTCCAAGGAAAAGCAGCAGAGAAGTGGGGTCAAGTTGATAACTTAAAATATGATTGCTGTTTTATATGTGTGGATGCATCTCTCCCTGTGCTGGACAAATATGTTGAGCAGAGGGTAGACTGTATGATGGATGCTGGATTACTCAATGAAGTCTATGATGTTTACAACGTGAATGCAGATTATACTAGAGGATTGCGGCAAGCCATTGGTGTCCGAGAATTTGAGCCACTTCTTAGAAGTTGCCTTGTTGAAGACATCTATAAAAGAGAGAAGGAACTGTTAAACGGTTCCAGAATAGAAAAGGGTTTGAAATTGTTTGATGGTAACCTGATGGGGTGGTTGAAATCTTCCTCTGATACTAATACCATAATTCTTTTAGAAGAAGCAATAGAAAAAGTGAAGGTTAATACCCGGAGACTTGTTCGACGACAGAAGAGGATGCTCAATAGACTGCAAACACTATTTGGTTGGAACATACATTTTGTTGATTCCACAGAGTCAATATCAAGCAAATCAGAGGATGTATGGACTGACCAAGTGGTTGAGTCAGCTACAAAGGTAGTTAGTTCCTTCTTGTGTGAGAATGGAAGCTTGTCATCTACTTGTGGCATGTCAAATGACACCAACGTGAAAATTAATCAAAGGGACCTCTGGACTCGATACATATGCAAGGCCTGTGGAGACAGGGTGCTAAGAGGATTACATGAATGGGAACAACACAAAAAGGGTCGTGGCCACAGGAAACGTATTTCTAGTCTCAAGAGCAAGGCACAAAGTCTTGAAGAAGTTGCTCAAATGGTGTGGTGTTGCAGAGACATGATGGGGGGATTCAATCACTATGTTGTTGTGAAGTTCAAGGATGGTGTAGCAGTTGAAGAACTCACTGAAGGGTTGGTGAAAATGGTCTCAGGGATTGAGCATGTTAAGTCCTTCCAATGGGGAAAAGATATCGGAGGACCTGATTTTCTGAGACAAGGCTTCACTCATGCTTTCTTGATGACTTTCAATGGGAAAGAGGAGTTTGATGCATTTCAGAGTCACCCAAATCATGTTGAGTTTTCCAAATTATTCTCACCTGCTGTTGAGAATATTTTAGTGCTGGATTTCCCACCTACCATTGTCAAAGCATAA 1839 0.4165 MNNRDSETSNPIDGGTKKPKVVVITGPTASGKSKLAVDLASHFPIEVINADSMQVYCGLDVLTNKLPLSQHKGVPHHLLGTVNPNVEFTAKVFRDSAIPIIDEILARNHLPVIVGGTNYYIQALVSPFLLDDLADYMNEGCYGDPSGILIFSVLKYFLFSFPIQFHIFLGYYICNFSGATRSDMSFPADNDNSSNGYDLLKEIDPVAANRIHPNNHRKINQYINLYSRTGVVPSKVFQGKAAEKWGQVDNLKYDCCFICVDASLPVLDKYVEQRVDCMMDAGLLNEVYDVYNVNADYTRGLRQAIGVREFEPLLRSCLVEDIYKREKELLNGSRIEKGLKLFDGNLMGWLKSSSDTNTIILLEEAIEKVKVNTRRLVRRQKRMLNRLQTLFGWNIHFVDSTESISSKSEDVWTDQVVESATKVVSSFLCENGSLSSTCGMSNDTNVKINQRDLWTRYICKACGDRVLRGLHEWEQHKKGRGHRKRISSLKSKAQSLEEVAQMVWCCRDMMGGFNHYVVVKFKDGVAVEELTEGLVKMVSGIEHVKSFQWGKDIGGPDFLRQGFTHAFLMTFNGKEEFDAFQSHPNHVEFSKLFSPAVENILVLDFPPTIVKA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00242 612 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 431 IPR039657 -
Aip03g00242 612 Gene3D Classic Zinc Finger 454 497 - -
Aip03g00242 612 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g00242 612 Pfam Stress responsive A/B Barrel Domain 514 606 IPR013097 -
Aip03g00242 612 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 431 - -
Aip03g00242 612 Hamap tRNA dimethylallyltransferase [miaA]. 21 425 IPR018022 GO:0008033
Aip03g00242 612 Gene3D - 511 612 - -
Aip03g00242 612 Gene3D - 181 240 - -
Aip03g00242 612 Gene3D - 19 453 IPR027417 -
Aip03g00242 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 280 IPR027417 -
Aip03g00242 612 SUPERFAMILY Dimeric alpha+beta barrel 509 607 IPR011008 -
Aip03g00242 612 SMART Dabb_2 513 607 IPR013097 -
Aip03g00242 612 ProSiteProfiles Stress-response A/B barrel domain profile. 513 605 IPR013097 -
Aip03g00242 612 Pfam IPP transferase 54 128 - -
Aip03g00242 612 Pfam IPP transferase 190 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00242 Aip-Chr3 2404919 2412395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00242 10 491 C2H2 Transcription Factor Family AT2G27760 52.459 3.78e-165 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00242 K00791 - gmx:100792690 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00242 03 2404919 2412395 Aip03g00242 03 2404919 2412395 ECH
Aip08g00618 08 5615890 5617059 Aip03g00242 03 2404919 2412395 PCT