Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00226 ATGTACCATCATCATCATCAAGGGAAGAACATCCATTCTTCAAGTTCAAGAATGGCAATGTCTTCTGAGAGGCACATGTTCCTTCAAGCTGCTGGAAATGGTTCCGGGGGTGACTCTGGGCTTGTGCTCTCCACAGATGCCAAGCCTAGACTGAAATGGACACCAGATCTTCATGCCAGGTTCATAGAAGCAGTTCATCAGCTTGGTGGAGCTGACAAGGCAACTCCAAAAACAGTGATGAAACTCATGGGAATTCCCGGGCTTACCTTATACCATCTGAAGAGCCATCTTCAGAAGTACAGACTGAGCAAGAATCTGCAAGGACAAAGTAATAACAACGTGCCTCACAAAATTAGTGCAAGTAGTGTATCTACGGGAGAAAGACCCTCTGAAAGCAATGGCACTCACAATCATATGAACAACAACACTTTAAACACTATTCCGTCTTCTCCTCAGTCGTCGAATAACAAAGATTTACACATAAGTGAGGCACTGCAGATGCAGATAGAGGTGCAAAGAAGGCTAAATGAACAACTAGAGGTGCAAAGACACATGCAGGTGAGGATAGAGGCACAAGGGAAGTACCTGCAAGCAGTGCTGGAGAAAGCTCAAGAAACACTTGGGAAACAGGATTTGGGAGTAGTAGGGCTTGAAGCTGCAAAAGTCCAACTTTCTGAGCTTGTTTCCAAAGTTTCCTCTCAGTGCTTGGAGCTTCAAACCAACAACAACCACTTACCAAATAATAATAATAATGACTGCTCCATGGACAGTAACAGTTGCCTCACATCAGAACAAGAGAATCTAAGGCCCTTCATCAATGGCCACCACCATAAATTCATGTTGGAGAGAAACACCACCACCGCCACCACCAACTTTCTGACGCCATTAGGGAGCAAGAACAATAATAGTAACAGTGCTGAGAGAAGAAGCTATGTAGTGGAGAGAAGTCCAAGTAACTTGTCTATGAGCATTGGACTTGAAAGGGAGACAGAAGCAGCGATGATGATGAGTAATGAGAAAGGTTCTCATCATCATCATCATCATCATCATCAAGATTATACGTTGCCACCTTCTTCTTACTTTTCAGCACCAAGGCTTGACCTTAACGCACGTGATCAGGATCAAAGTCATGAAGCAACTGCTGCAACTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAGCTAA 1188 0.4394 MYHHHHQGKNIHSSSSRMAMSSERHMFLQAAGNGSGGDSGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLQGQSNNNVPHKISASSVSTGERPSESNGTHNHMNNNTLNTIPSSPQSSNNKDLHISEALQMQIEVQRRLNEQLEVQRHMQVRIEAQGKYLQAVLEKAQETLGKQDLGVVGLEAAKVQLSELVSKVSSQCLELQTNNNHLPNNNNNDCSMDSNSCLTSEQENLRPFINGHHHKFMLERNTTTATTNFLTPLGSKNNNSNSAERRSYVVERSPSNLSMSIGLERETEAAMMMSNEKGSHHHHHHHHQDYTLPPSSYFSAPRLDLNARDQDQSHEATAATCKQLDLNGFSWS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00226 395 MobiDBLite consensus disorder prediction 106 155 - -
Aip03g00226 395 Coils Coil 162 182 - -
Aip03g00226 395 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g00226 395 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Aip03g00226 395 PANTHER MYB-RELATED PROTEIN 2 4 395 - -
Aip03g00226 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 395 IPR044848 GO:0003700
Aip03g00226 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Aip03g00226 395 Pfam MYB-CC type transfactor, LHEQLE motif 160 206 IPR025756 -
Aip03g00226 395 MobiDBLite consensus disorder prediction 339 360 - -
Aip03g00226 395 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Aip03g00226 395 Gene3D - 47 105 - -
Aip03g00226 395 MobiDBLite consensus disorder prediction 291 314 - -
Aip03g00226 395 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00226 Aip-Chr3 2269232 2272295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00226 80 394 G2-like Transcription Factor Family AT3G04030 43.258 5.06e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip03g00226 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00226 - - gmx:100810396 425.631