Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00212 ATGCCACGGGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCATCCGAGCCTGAAAATCCAGCTGAATCTGATGAAAAGATCGATTTTGATGACGCAAATGATGCTGAGGAAACAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGTGGAAGAAGAGGAAGAGGATCCGGAGGAGGTTGAGGTGGTGGAGGAGGAAGAGGAGGAAGAGGATCCGGAGGAGGTGGAAGAGGTTGAAGAAATGGAAGAAGATAATATCATGCAAAACAGTAGCAAGGCAGAAGATAAGGATGAGAAGAAAAAGCATGCTGATCTTCTATCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGTATTCCACTTGATGCCTCAACTGAGGATTTGAAAGCATTTTGTGAGTCTATTGGGGAAGTTGCAGAGGTTCGTGTAATGACAGGAAAAGATTCTTCTGAGAATAAGGGATTTGGTTTTGTGACATTTAAAAGTGTGGAATTGGCTTCTAAAGCCATCAAGGAGCTGAACAATAAAGCATTTAAGGGTAGAAAAATAAAATGTTCAACAGCTCAAGCAAAACACCGTCTTTTTATTGGCAATGTTCCCAGAAACTGGGGTGATGAAGATCTCAGGAAGGTTGTATCTGATGTTGCACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACTAAAAATAACCGTGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCTCAACATTTAAGCTAGGTGACAATGCTCCAACGGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAAGGCAGTATATGTGAAGAACTTGCCTAGGAATGTAACTCAGGAGCAGATGAAGAAGCTTTTTGAACATCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGGCAGGAAAAGAATAGAATAGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTGGACTGCTCTCTAGCTAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACTTGCAGAAGCCAGGATTGCTTCCAAGCTATCCCCCACATGTTGGTTACGGTTTGGTTGGTGCCCTTGGCACGGGACATGGTTCCCCAGGGACTAATTTGCCTGGGGTCTAA 1266 0.4218 MPRGKANSSSVAKPSEPENPAESDEKIDFDDANDAEETMEEEIEYEEVEEEEEVEEIEEVEEEEEDPEEVEVVEEEEEEEDPEEVEEVEEMEEDNIMQNSSKAEDKDEKKKHADLLSLPPHGSEVYIGGIPLDASTEDLKAFCESIGEVAEVRVMTGKDSSENKGFGFVTFKSVELASKAIKELNNKAFKGRKIKCSTAQAKHRLFIGNVPRNWGDEDLRKVVSDVAPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSSTFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPRNVTQEQMKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILDCSLAKPQADQKSGGSNLQKPGLLPSYPPHVGYGLVGALGTGHGSPGTNLPGV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00212 421 SUPERFAMILY RNA-binding domain, RBD 290 394 IPR035979 GO:0003676
Aip03g00212 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Aip03g00212 421 Coils Coil 38 66 - -
Aip03g00212 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Aip03g00212 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 271 IPR000504 GO:0003723
Aip03g00212 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 366 IPR000504 GO:0003723
Aip03g00212 421 SMART rrm1_1 298 371 IPR000504 GO:0003723
Aip03g00212 421 SMART rrm1_1 204 281 IPR000504 GO:0003723
Aip03g00212 421 SMART rrm1_1 124 197 IPR000504 GO:0003723
Aip03g00212 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 285 IPR000504 GO:0003723
Aip03g00212 421 Gene3D - 204 284 IPR012677 -
Aip03g00212 421 CDD RRM_SF 125 197 - -
Aip03g00212 421 Gene3D - 9 203 IPR012677 -
Aip03g00212 421 Gene3D - 285 391 IPR012677 -
Aip03g00212 421 MobiDBLite consensus disorder prediction 23 94 - -
Aip03g00212 421 SMART rrm2_1 124 197 IPR003954 GO:0003676
Aip03g00212 421 SMART rrm2_1 298 371 IPR003954 GO:0003676
Aip03g00212 421 PANTHER RNA RECOGNITION MOTIF 1 419 - -
Aip03g00212 421 MobiDBLite consensus disorder prediction 1 123 - -
Aip03g00212 421 MobiDBLite consensus disorder prediction 95 117 - -
Aip03g00212 421 SUPERFAMILY RNA-binding domain, RBD 120 289 IPR035979 GO:0003676
Aip03g00212 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Aip03g00212 421 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00212 Aip-Chr3 2155195 2159676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00212 145 380 Eukaryotic Initiation Factors Gene Family AT4G34110 25.468 1.10e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00212 K13161 - gmx:100785076 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00212 03 2155195 2159676 Aip03g00212 03 2155195 2159676 ECH