Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00202 ATGTCGGGCACCAGAGCTCCTCCCGCCGCTGCAAGCCCATCGGAGCAGATCATGCGGCGCCAACTTCCGCTCTCCGCCATGAAGCCGCCCTTTGCCGCCTCCGTTGATTACCACCGCTTTGCCCCCGACCACCTCCACCACAACCGCCGAACTGTTGACCACGAACCGGAAGCCATCGTTGTTAACTCTTCCCAATTGAAGCGGAAGAGTAACACAACAGATTTTGAAGTTGATTCTGGTGATAGGGTGAATCATGTATCCATGGGAGCAGCTAATAATCCTTTTCAGACCCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACCAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAGAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAACCTTACCATGAAGGAGTGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTAAGTGACCTTAGTGAAAATGAAAATAGTGAAAAATTGCTTTTCGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATGGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTTCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAGGGGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCAAATTTCAACCGACTCCAGAATTTAAAAACCATCAACCAACTGTGGTTGTAGAGGATAACGGGAAAGACATTGCAGTGCAGGGACAAGATGGTCAAATACCTAGTTCTGATTTTACTTCTACACAAGACTTTGTGAGTGGGATCGTGAAAATTGTTCCTTCAGATGTTGATAGCGATGCTGACTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGTGTCGAATGGAATGAACTGGGTACTCTTCAAGATGATTTTTGTACAACTCGCGAGCATGCTATAACTCTAACACATACTTCGGATGTAAATGAAGCATCTACTGCAGCATCAAACCCTGCTGGGGGTTGA 1389 0.4428 MSGTRAPPAAASPSEQIMRRQLPLSAMKPPFAASVDYHRFAPDHLHHNRRTVDHEPEAIVVNSSQLKRKSNTTDFEVDSGDRVNHVSMGAANNPFQTPKSGKIGKGGKSSRLTKCNRSGPQTPGPNIGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMKECRLDEQIREMQERLSDLSENENSEKLLFVTEEDIKNLPCFQNETLMAIKAPHGTTLEVSDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEGKFEEINGADVAPKFQPTPEFKNHQPTVVVEDNGKDIAVQGQDGQIPSSDFTSTQDFVSGIVKIVPSDVDSDADYWLLSDADVSITDMWRTESGVEWNELGTLQDDFCTTREHAITLTHTSDVNEASTAASNPAGG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00202 462 MobiDBLite consensus disorder prediction 111 136 - -
Aip03g00202 462 Coils Coil 158 178 - -
Aip03g00202 462 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Aip03g00202 462 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Aip03g00202 462 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Aip03g00202 462 Gene3D - 215 324 - -
Aip03g00202 462 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Aip03g00202 462 PANTHER TRANSCRIPTION FACTOR E2FB 16 440 - -
Aip03g00202 462 Gene3D - 137 209 IPR036388 -
Aip03g00202 462 PANTHER TRANSCRIPTION FACTOR E2F 16 440 IPR015633 GO:0000978|GO:0006357
Aip03g00202 462 MobiDBLite consensus disorder prediction 87 136 - -
Aip03g00202 462 CDD E2F_DD 218 324 IPR032198 GO:0046983
Aip03g00202 462 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00202 Aip-Chr3 2041821 2046974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00202 19 461 E2F-DP Transcription Factor Family AT5G22220 54.584 1.13e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aip03g00202 E2F_CC-MB 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00202 K06620 - gmx:100819817 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00202 03 2041821 2046974 Aip03g00202 03 2041821 2046974 ECH