Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00197 ATGAATAAAGCGATCGATTTTGCTTCAGTTTTCTTACTCTTCACACTCTTTTCTCATCAATTTATTCTTCGTGTTTCTTCATCCAATTCACCCATACTTCCGAACCAGGGATATGCAGATGAAAGAATTCTCAAACCGGAACAAGAGCATGTGCATGAAGTGCATTGCTCTAGAGAAAGGAGCAGGGCAGCTAGGAAAGTGATAGAGGAGTATTTGACACCATTTTTGGAGCAAGAAAACTATCAGCTTTCAAGCAAGTGCAGACTTCACCCTGAAAATGACATGTTTAGGGATCAAGAAGAGCATAAAATTTGCCTAGGCTTTCATGACTGGAAGTGCGGATATTGTAAGAAAAGCTTCCGAGATGAGAAGTTTCTTGATCAGCATTTTGATAACAGACACTCCAATCATCTCAATTTAAGTGATGGTAAGTGCTTGGCTGATTTATGTGGGGCATTGCATTGCGATGCTGTGATGAACACAAAGTTCTCTAGAAGCAAGTGTAATCCAGCTGCTGCCACAAGGAATAAACACCTATGTGAGAGTCTTGCTGAGAGTTGTTTTCCTGTAAGTGATGGTCCATCTGCAAGTCGTCTTCATGAAATATTTTTACACCAATTTTGTGAGGCCCATACCTGCTCAGGGAAACAGAAACCCTTCTCTAGAGGAGGCAAGGTACAAAAAAGTATCTTTGTCGTGGTTTCTGGAGCATTGATCTTGGTGCTACTTCCTTTGTTCTATCTTTTCCTTTATCTGGTACAAAGAGATATGAAGAGTAGTACTCAAGAACTTCGCCGCATCTCAAAAATGGGACGGAAATCAAAGCCATCATGA 834 0.4077 MNKAIDFASVFLLFTLFSHQFILRVSSSNSPILPNQGYADERILKPEQEHVHEVHCSRERSRAARKVIEEYLTPFLEQENYQLSSKCRLHPENDMFRDQEEHKICLGFHDWKCGYCKKSFRDEKFLDQHFDNRHSNHLNLSDGKCLADLCGALHCDAVMNTKFSRSKCNPAAATRNKHLCESLAESCFPVSDGPSASRLHEIFLHQFCEAHTCSGKQKPFSRGGKVQKSIFVVVSGALILVLLPLFYLFLYLVQRDMKSSTQELRRISKMGRKSKPS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00197 277 PANTHER ZINC FINGER PROTEIN-RELATED 15 277 - -
Aip03g00197 277 ProSitePatterns Zinc finger C2H2 type domain signature. 113 134 IPR013087 -
Aip03g00197 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 139 IPR013087 -
Aip03g00197 277 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00197 Aip-Chr3 2006429 2009399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00197 35 277 C2H2 Transcription Factor Family AT5G63280 59.677 4.36e-102 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00197 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00197 - - gmx:100780668 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01651 01 62601100 62605763 Aip03g00197 03 2006429 2009399 ECH
Aip03g00197 03 2006429 2009399 Aip03g00197 03 2006429 2009399 ECH