Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00194 ATGAATGTCAACATCTCATCCTACCCCGTAATGGATACATCACTCCAGCAAGCAAGCTTCCCAAAACGGCAAAACCTTCTTAACCCATCACAATCCCTCATTTCTGCTGAGAAAGAAAGGAAGAAGATGCGTCCCGAGGCACTAGTGTGTGAAGAATGCGCCAGCAGGTGTGTTTTGTTGCACGGAAACGAGAAGAAAAAATCGTCACTTTTTCCTCCTTCTTTCTTCAGGATCATGTTTGACAAGAACACTCCCACTATTATGTATCTTCCTGACAAGTTTAAACCTGCTGTAGCTGCCTCCGTTAATAAGAAAATCATTCTTGCTGACAAAAGTGGGGAGAGATGGAAAGTAACTTTATCCAAAGCCGGTAGTCACTTGGTTTTCAAGGAAGGATGGAATAAGTTTTCGTCGGACCATGGACTTGAACGTGGAGATATTCTGGTATTCCATCATGTTACTGATGTGCACTTTTATGTTACAATCTATGATAAATATGCTTGTGAAAAGCTTTGTTTTTCGAATACGAGAAATAAGACAAAACGTAGAAGGGACAGTAGTGTCTCTCCAGTTAGAGATGTCATGTTGGCTACACCAGATCAAAATGCGTCGGTTGTTTCTGAGCCAGATGCTAAAAAGACAAATAGCCAGAACAAAGTGGTTGGTGTAGGAGGAACACCAAATAATGTAGAGAATATTTCAAAACATGATAAGAGCAATGGAAGTGTCAAATCTACGAGAATGACAGAAAACTATGACAACACTGCGAAAATTACAACCAGAGAATCAAGAGTTTCTCCTGTCAACTACAAATTGTGCATGAATCCAGTCGATGCAATTCTATGCGACAACTCTCCTTCATTTGAAGAGAGATTCAGAGGAGCTGCTGCATTTTTGTCAGAAGCTGAACTATCTGGAAAAAAGGATTCTATTAGAAATACTGACAGAAGCACATACGATAATACTTCTACTTGCAAACTTGGAGAAAGAAAAGAGAAGAATGTTTTGAAAAGGGAAGTTAGAGAGTTCCAATATGCTGAGGACTTAGAAGGTGATAATAAGGTGGCAATGTCCAAGAAAGAACATGGCTTTCATATTGATGGATGTCTCAACACCAAACCAATGTTAAATGCCACACCGAATATCTCAGATGCTATTCGACTCAAAAGTGATCCTATGGCAACATCCAAGGGAAAACATGGATTGCAAATTGATGGATGTCCCAATACCAAACATATTGTCAATAATGGCATACCAAGGGTCTCAAGTGCTACTCAAAACGGCAAAATCTTAAAAAAGATTAAGAGCGAGCAGGCAGACAGGAATCCCAGTGAGGAGTGCACTTTTAAGGACAAAGTGTGTGCAAAAGGTGAAATGTCCAAAAGGATTAAAAAAGAGCCGCGTATGGATATGACTTACAACATGTCCAGATTCAAGGATGAATTCGAAGCCAGAGGTATTGAAGTTCCCAAAGGCTTTCCAAAGGTTATCAAGAAAGAGTTTGAGAAGAGTTCACACAAGACTGAACAAAATGATGATAACGATGATGACAGTGATAACGTTCAATTGGCAGAAGTTGTGCGCTGCGTGGTACCCGATCATAATGATAATTTTCTTGAATTGCCTTCACACTTGCATCAGTGCCGGAACTATAAAAATAACAGGATGGTGGTGATCCTGCAAGATCCACAGAAGAGACTATGGCCGGTTCTTTACCATGATCTTCATGATAAAAAAATGCATGGTACAAAAGCCTTTTATCTGATAAAAGGATGGTCACAATTTTACAGAGCCAATAATATTCAACCAGGAGATTTGTGTACTTTTGAACTTAAGGAGGAGGATAAACACATCTTCAATGTAGATATAAACCACAATTAA 1881 0.3939 MNVNISSYPVMDTSLQQASFPKRQNLLNPSQSLISAEKERKKMRPEALVCEECASRCVLLHGNEKKKSSLFPPSFFRIMFDKNTPTIMYLPDKFKPAVAASVNKKIILADKSGERWKVTLSKAGSHLVFKEGWNKFSSDHGLERGDILVFHHVTDVHFYVTIYDKYACEKLCFSNTRNKTKRRRDSSVSPVRDVMLATPDQNASVVSEPDAKKTNSQNKVVGVGGTPNNVENISKHDKSNGSVKSTRMTENYDNTAKITTRESRVSPVNYKLCMNPVDAILCDNSPSFEERFRGAAAFLSEAELSGKKDSIRNTDRSTYDNTSTCKLGERKEKNVLKREVREFQYAEDLEGDNKVAMSKKEHGFHIDGCLNTKPMLNATPNISDAIRLKSDPMATSKGKHGLQIDGCPNTKHIVNNGIPRVSSATQNGKILKKIKSEQADRNPSEECTFKDKVCAKGEMSKRIKKEPRMDMTYNMSRFKDEFEARGIEVPKGFPKVIKKEFEKSSHKTEQNDDNDDDSDNVQLAEVVRCVVPDHNDNFLELPSHLHQCRNYKNNRMVVILQDPQKRLWPVLYHDLHDKKMHGTKAFYLIKGWSQFYRANNIQPGDLCTFELKEEDKHIFNVDINHN 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00194 626 Pfam B3 DNA binding domain 87 165 IPR003340 GO:0003677
Aip03g00194 626 Pfam B3 DNA binding domain 538 617 IPR003340 GO:0003677
Aip03g00194 626 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 53 623 - -
Aip03g00194 626 MobiDBLite consensus disorder prediction 201 246 - -
Aip03g00194 626 CDD B3_DNA 73 164 IPR003340 GO:0003677
Aip03g00194 626 MobiDBLite consensus disorder prediction 201 236 - -
Aip03g00194 626 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 623 IPR044837 -
Aip03g00194 626 ProSiteProfiles B3 DNA-binding domain profile. 73 166 IPR003340 GO:0003677
Aip03g00194 626 SMART B3_2 80 166 IPR003340 GO:0003677
Aip03g00194 626 SMART B3_2 526 622 IPR003340 GO:0003677
Aip03g00194 626 SUPERFAMILY DNA-binding pseudobarrel domain 72 168 IPR015300 -
Aip03g00194 626 Gene3D - 69 168 IPR015300 -
Aip03g00194 626 Gene3D - 520 626 IPR015300 -
Aip03g00194 626 SUPERFAMILY DNA-binding pseudobarrel domain 527 621 IPR015300 -
Aip03g00194 626 CDD B3_DNA 535 623 IPR003340 GO:0003677
Aip03g00194 626 ProSiteProfiles B3 DNA-binding domain profile. 524 626 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00194 75 169 B3 DNA Binding Superfamily AT4G01580 26.042 2.16e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip03g00194 B3 7.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00194 - - adu:107478866 1138.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00194 03 1983022 1988652 Aip03g00194 03 1983022 1988652 ECH