Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00192 ATGGAACCTTCTGAATCAGAATCAGTTGGTTCCTCCACCACAACCACCACCAAAGACCCACAATTGGGTTCTCAGAATGAACCTTCTTCTCCTTTTCCCAATCATCATCACGATCCTCAACAATCAGAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGCGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGACTTTGTAGCTGGTAGTGAAGGTGGTTGTGCCCCGGAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGCGGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAAATTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAGCCAGGCTGTTAAAGAGAAGGTTGGGGGAGAAAGAGAAGAACCGGCTGAAAAATCGGGCCAGATAGAATGCAAGTATTATTTAAGGTCGGGAGGATGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGCCTTCAGCTGCGCCACTTTTGGAGCTTAACTTTCTTGGCCTGCCTATACGATTGGGAGAGAAACAATGTCCCTATTACATGCGCACAGGCTCCTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACTTCTGGTGGTAGAGTTGGGGATTCTGTTTCAGGATTTGGTAACGGTAATTATGTCCCTCTACAAGGCGCATCACAACCACCATCTGGTCCCTCGTGGTCATCTTCAAAAACATTAAATGATACTACTCCTTTTGTGCCAATGATGCTTTCGCCTAGTCAAGCGGTTTCTCCCCGAAGTCCTGAATGGAACGGATACCAGGCACCTGTCTATCTATCCGAGAGGGGTATGCACCAACCGCCGGCATATGTCATGAACAACCCAACAATCGAAACACCTATGTACATGCACCAACCAAAGCAGACGCCAATTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTCCATCATCCAAAGAATCGGGTTGCAAGAATACCTCCGTGCAACCTCAGTGACAAGGGCCTGCCTCTCAGACCTGACCAGAATGTATGCTCCCATTACAGCCGCTACGGGATTTGCAAATTTGGACCAGCTTACACGCCTAATGAGATGACTACGATGGAGGGAAATGGAGATGCCAATGATGAGGCAATTCGGCAGCCTGTTTAG 1497 0.4509 MEPSESESVGSSTTTTTKDPQLGSQNEPSSPFPNHHHDPQQSEPDLSENLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSDFVAGSEGGCAPETGEAQGSDDNDGWDDDEGYGWNENVKESEVDKVSGDFDVDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGNCKFGFNCKFNHPLGRRKSQAVKEKVGGEREEPAEKSGQIECKYYLRSGGCKFGKACKFNHTRGKPSAAPLLELNFLGLPIRLGEKQCPYYMRTGSCKFGANCKFNHPDPTSGGRVGDSVSGFGNGNYVPLQGASQPPSGPSWSSSKTLNDTTPFVPMMLSPSQAVSPRSPEWNGYQAPVYLSERGMHQPPAYVMNNPTIETPMYMHQPKQTPIEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVARIPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPAYTPNEMTTMEGNGDANDEAIRQPV 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00192 498 ProSiteProfiles Zinc finger C3H1-type profile. 175 203 IPR000571 GO:0046872
Aip03g00192 498 PANTHER PROTEIN PHOSPHATASE RELATED 13 475 - -
Aip03g00192 498 SUPERFAMILY CCCH zinc finger 413 437 IPR036855 GO:0046872
Aip03g00192 498 MobiDBLite consensus disorder prediction 1 37 - -
Aip03g00192 498 MobiDBLite consensus disorder prediction 299 336 - -
Aip03g00192 498 Gene3D - 149 213 - -
Aip03g00192 498 ProSiteProfiles Zinc finger C3H1-type profile. 408 436 IPR000571 GO:0046872
Aip03g00192 498 MobiDBLite consensus disorder prediction 313 336 - -
Aip03g00192 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 296 IPR000571 GO:0046872
Aip03g00192 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 249 IPR000571 GO:0046872
Aip03g00192 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 410 435 IPR000571 GO:0046872
Aip03g00192 498 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 201 IPR000571 GO:0046872
Aip03g00192 498 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Aip03g00192 498 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 475 - -
Aip03g00192 498 SMART c3hfinal6 408 435 IPR000571 GO:0046872
Aip03g00192 498 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Aip03g00192 498 SMART c3hfinal6 175 202 IPR000571 GO:0046872
Aip03g00192 498 SMART c3hfinal6 454 475 IPR000571 GO:0046872
Aip03g00192 498 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Aip03g00192 498 MobiDBLite consensus disorder prediction 117 137 - -
Aip03g00192 498 MobiDBLite consensus disorder prediction 1 169 - -
Aip03g00192 498 MobiDBLite consensus disorder prediction 139 153 - -
Aip03g00192 498 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Aip03g00192 498 SUPERFAMILY CCCH zinc finger 271 297 IPR036855 GO:0046872
Aip03g00192 498 SUPERFAMILY CCCH zinc finger 229 252 IPR036855 GO:0046872
Aip03g00192 498 Gene3D - 214 300 - -
Aip03g00192 498 Gene3D - 403 475 - -
Aip03g00192 498 MobiDBLite consensus disorder prediction 50 88 - -
Aip03g00192 498 SUPERFAMILY CCCH zinc finger 176 204 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00192 Aip-Chr3 1935996 1939030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00192 172 494 C2H2 Transcription Factor Family AT3G02830 39.828 1.23e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip03g00192 zf-CCCH 6.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00192 - - gmx:100786894 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01641 01 62047632 62052694 Aip03g00192 03 1935996 1939030 ECH
Aip03g00192 03 1935996 1939030 Aip03g00192 03 1935996 1939030 ECH