Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00191 ATGGCGGAACCAAACGGCGACGTTTTCCAGTGGCTGAAGTCGATGCCGTTAGCGCCGGAGTACAGGCCGACGCTAACGGAATTCCAAGATCCGATCGCCTACATTTTCAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAGATCATACCGCCGTTTCCACCGCCGCCGAGGAAGGTTGCAATTGCCAACTTCACTCGCTCGCTGACTAAGCCCGACGAGCCTAACTCAAAGCCTACATTCACCACTCGCCAGCAGCAGATCGGGTTCTGCCCCCGCCGGCCCAGGCCCGTTCAGAGGCCCGTGTGGCAAAGCGGTGAGAACTACACTTTTCAGGAATTCGAGGCTAAGGCCAAAGCATTCGAGAAGAGCTACCTCAAGAAGCATCATCTTCACCACCAAGGCCACCGGAAGGGAGGAGGAGCTGGTGGTGGTTCCGGTGGCCTAGGGCCTCTCGAGGTGGAGACGCTGTTCTGGAAGGCGACCGTTGACAAGCCGTTCTCGGTGGAGTATGCGAACGACATGCCGGGCTCGGCGTTCAGCCGGAAATGCAGGGAGGAGTGTGCGGCGGCGCTAGCGGAGTCGGCGTGGAATATGAGGGAGATTTCGAGGGCGAATGGTTCGTTGTTGAGGTTCATGAAGGAGGAGATACCTGGTGTTACTTCTCCTATGGTGTATTTGGCTATGTTGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACCTCCATAGCTTGAATTACCTTCACATGGGTTCTGGGAAGACCTGGTATGGCGTGCCGAGAGATGCAGCCGTGGCGTTCGAAGATGTTGTTAGGGTTCATGGATATGGCTCTGAGATTAATCCTCTTGTTACTTTTTCTACTCTTGGCGAGAAAAACACAGTGATGTCACCTGAAGTATTGATAAACGCAGGTGTTCCATGCTGCAGGTTAGTTCAAAATGCTGGGGAATTTGTTGTGACTTTTCCAAGAGCTTATCATACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCCAACATTGCAACGCCTGAATGGTTGAGAGTTGCAAAAGATGCTGCTATTCGGAGGGCTTCAGTAAATCATTCTCCTATGGTTTCACATTTCCAGTTACTTTATGACCTAGCCTTAGCTTTGTGTTCTAGGTTTGTCTTCTGCTATTATGGCTTCTTACTTTTTGGCTATAAGAAGAGGGGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTCACAGAACAATGATCTGCTTCAAGAACTCAGCAAAGGATCTGAGATAATACTTCTACCTCGTAGCTCATTTGACATTTCTCTTTGCTCAAAATTACGTTCTGGATCCAAACAGCGAAAAGTGAACTCTCGATTTTCCCTTGGTGCATGCAACTCCGAGGAAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGCGTTCAGCATGAACAGAGGAATCAAGCAAGAAGGTTCCCTTTCTATAAAAGACAAGATTACTTCATTGTGTGAAAGGAGCATGATTTCTTCATATGATGTAAATGGCAACATCTGCTCTTCAAGTTCCAAGCCACTTCAAGGTGACAATGAAAGAGAAAGTGGTGAAGGGGATGGATCGCCAGATAAGAGACTTTTTTCATGTGTCACATGCGGAATATTGTGCTTTCCTTGTGTAGCTATTGTACAGCCTAGAGAATCTGCTGCTAGATATCTCATGTCAGCTGATTGTAGTTTCTTTAACGATTGGGTCGTTGGTTCTGGAGTGTCTAGCAAAAAGTTTATTGTCCATGAAGAAGCGGCTTTTCCTGAATCAAGGTGGACAGAAAAGAAGACCCAAAATGGATTGTATCAGGATCCTGTTCAATCTGCCCAGTATCAGCTACTGACTGCTGAGCGTAATTATGCGGAGTCCCTTAATTCTGATAGAGGAAAAAGCAATACAGCTCTTGCATTGTTGGCTTCAACATATGGAAATTCTTCTGACTCTGAGGAAGAGCAGGGTGACTCAGATATTGTAGTTGATGGTCATGAATCACCTGTGATTAATGCCACATTAGGAGGATCACCATCTAATTTTCAAGATGCCTGTGCTATTCCCCCGACTGGACCTGATAGCAGAAATGATTTTAGTCATCAATCTTTTGACCACTCTTTAGAAAAACAGGATTCTGATACTGCTTCAGGGCTTGCATTAAAAAATATGAGGGCAATGTATACCAATGATACTGAAAAAGCATTGTTGGGCAAGGCTATGGTTCCCAATGATGATAAAAATGCCTCTGTGATCCCACAAGGTGATGAAGACTCATCTAGAATGCATGTCTTCTGTCTGGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATAATGCTCCTATGTCATCCAGATTTCCCCAAGATAGAGGCTGAAGCTAAGCTTGTAGCAGAAGATCTTGGGATTGATTACCTGTGGAAGAAGATTGAGTACAGGCATTCCAGCAAGGAGGATGAGGAGAGGATCCAGGTAGCCCTGGATAGTGAGGAAGCTATTCCTGGGAATGGGGACTGGTGTGTGAAGCTGGGAATCAATCTTTTCTACAGTTCAACTCTTAGCCGTTCTCCTCTTTACAGTAAGCAGATGCCTTACAATTCTGTCATATATTATGCATTTGGCCAAAGCTCTCCAGGAAGTTCACCATTAGAACCAAAGGTCTATCAGAGAAGGGTTAACAAGCAGAAAAAGATAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAGTCAGGTACATCCTCTTTTGGCCAAAAGAGATTCTGAAGATGTTGAAGATGAGAAAAGCTTACATGGGTGGGGATTACATGATGAGAAAATAGAGAGATCAGGAAGCATCCCTAAAAGCGAAACTAGTGCCAGAAAATCAGGTAAGAAGCGGAAAATGACTATTGAGAATGGAAGAGCCAGGAAAGGCAGTTTTGCTGAGAGAGATGTGGATTTGGATAATCCAACTGAAGACAAACCTAACCAACAGCTGAGGAGGACTCTTAGAAGTAAGCAAGCCAGGGATATTGAGAGTGAAGGTGCTGATTTGGAAGGGGATTATTCTCCCCCATATCATCATAGAAAACCTTTAAGTGACCAAACAAATTGCACAGGAAGTGATGCTGTTTCTGATGATTCACTTGATGATAAATTTATTGACAATGATGTGCTTTCGGATGATACAATGGTCTATGATTCTGATTGCCATCAGAGATTTGAACATAGCAGCATGCAAGTTGAAGACATAGAAGATGCAGTTTCTGAGGATTCATTGGATGACAGTTCTCTTCAGCTTCATAGGAAGAATTCTAAAAGCAAGCATGCCAGATACATTAGAAAAGGCAGATGCATTGCTGAGAAAGAGGAAATGATGTCTGATGACCAATTGGAGCCACACAAGAAGAAGAAGCAACAGAGGAATCCTAAAAGCAGGCAAGCAAAATACCTTGCAAGAGAAGATGCTATATCACATGGTCAATTGGAGGGACATTGTCGCAAGTATAGAAAGACTCCTAAAGGTAGACTGGCCAAATATGTAGCAGGGGAAGATGTATCATCTGATGAGCAATTGGAGAATTACAGTCGGAAGCAGCAAACAAGTCTTCCTAAAAGGCGGAAAAACAAAGGTGTATTGACTGATGACCAATTGGAGGACCATTTTCAGAAGCAGCAAAAGAGTGTTTCTAGGAGAAGGCAAAACAAAGGCATTGAAAGAGGGGTTAAAGACGAAATGTCTGATGACCAATTAGAGGATCACGTTCAGAAGCAGCAAACTAGTGTTTCTAGGAGGAGGCGAAACAAACAAATTGAAAGAGAAGATGTGATGTCTGATGATGAAATGGAGGATCACATTCAGAAGCAGCGGAGTAGTATTCCTAGAAATAGGCAAAACAGTAATTCTCATCTGGTCCATAAAACTCCTAAACGAAAGCAAGCGAAATGCGTTGATGATGATGATGGTGATGATGATGATGTAAATTCTGATGATGAAGTGGAAGATGATTCTCAGCAGAAGCAGCAGAGAACTCTTAGAAGTAAGCAATCAAAACCAATGACACTTAAGCAGATGAAGCAAGCTCGCTCTCTCCAAATGAAAAATCAGACATCCCGGCCTGTAAAACGAGGTGCTCAGACACTTAAGAAATTAAAGGCATCTCAGATGCGGAATAAGCAATCTGGTAAATCCAGAGAGTTTAGTTTGAAAATGGAAGAGGGGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCCCAAAAGTCGAGGAGTCTGATGGAATATCAAAAGAAAAGCAAACCAAAAAGAAAAGGGTGAAGAATGCTACATCTGCAAAGGCAGCTAGCAATGCTAAAGTGAAGGATGAGGAAAATGAATTCCAGTGTGACATTGATGGCTGCACCATGAGTTTTGGGTCAAAACAGGAGCTGATGCATCACAAGAGAAATATATGTCCTGTAAAAGGTTGCGGGAAGAAGTTTTTCTCGCACAAATATCTGGTGCAGCACCGACGAGTTCACGAGGATGACCGCCCATTGAAGTGCCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACAGAACATATTCGAGTCCACACTGGTGCGCGACCATATGTATGTGCCGAGCCAGGCTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGCCATAAGCGTAAGACTGGGCACTCAACAAAGAAGAGTCGCTAA 4773 0.4454 MAEPNGDVFQWLKSMPLAPEYRPTLTEFQDPIAYIFKIEKEASKYGICKIIPPFPPPPRKVAIANFTRSLTKPDEPNSKPTFTTRQQQIGFCPRRPRPVQRPVWQSGENYTFQEFEAKAKAFEKSYLKKHHLHHQGHRKGGGAGGGSGGLGPLEVETLFWKATVDKPFSVEYANDMPGSAFSRKCREECAAALAESAWNMREISRANGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEDVVRVHGYGSEINPLVTFSTLGEKNTVMSPEVLINAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASVNHSPMVSHFQLLYDLALALCSRFVFCYYGFLLFGYKKRGEGETVIKELFVQDVSQNNDLLQELSKGSEIILLPRSSFDISLCSKLRSGSKQRKVNSRFSLGACNSEEMNSSKGFVSDDLAFSMNRGIKQEGSLSIKDKITSLCERSMISSYDVNGNICSSSSKPLQGDNERESGEGDGSPDKRLFSCVTCGILCFPCVAIVQPRESAARYLMSADCSFFNDWVVGSGVSSKKFIVHEEAAFPESRWTEKKTQNGLYQDPVQSAQYQLLTAERNYAESLNSDRGKSNTALALLASTYGNSSDSEEEQGDSDIVVDGHESPVINATLGGSPSNFQDACAIPPTGPDSRNDFSHQSFDHSLEKQDSDTASGLALKNMRAMYTNDTEKALLGKAMVPNDDKNASVIPQGDEDSSRMHVFCLEHAVEAEQQLRPIGGAHIMLLCHPDFPKIEAEAKLVAEDLGIDYLWKKIEYRHSSKEDEERIQVALDSEEAIPGNGDWCVKLGINLFYSSTLSRSPLYSKQMPYNSVIYYAFGQSSPGSSPLEPKVYQRRVNKQKKIVAGKWCGKVWMSSQVHPLLAKRDSEDVEDEKSLHGWGLHDEKIERSGSIPKSETSARKSGKKRKMTIENGRARKGSFAERDVDLDNPTEDKPNQQLRRTLRSKQARDIESEGADLEGDYSPPYHHRKPLSDQTNCTGSDAVSDDSLDDKFIDNDVLSDDTMVYDSDCHQRFEHSSMQVEDIEDAVSEDSLDDSSLQLHRKNSKSKHARYIRKGRCIAEKEEMMSDDQLEPHKKKKQQRNPKSRQAKYLAREDAISHGQLEGHCRKYRKTPKGRLAKYVAGEDVSSDEQLENYSRKQQTSLPKRRKNKGVLTDDQLEDHFQKQQKSVSRRRQNKGIERGVKDEMSDDQLEDHVQKQQTSVSRRRRNKQIEREDVMSDDEMEDHIQKQRSSIPRNRQNSNSHLVHKTPKRKQAKCVDDDDGDDDDVNSDDEVEDDSQQKQQRTLRSKQSKPMTLKQMKQARSLQMKNQTSRPVKRGAQTLKKLKASQMRNKQSGKSREFSLKMEEGEEGGPSTRLRKRAPKVEESDGISKEKQTKKKRVKNATSAKAASNAKVKDEENEFQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKSR 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00191 1590 Pfam JmjC domain, hydroxylase 225 343 IPR003347 -
Aip03g00191 1590 ProSitePatterns Zinc finger C2H2 type domain signature. 1560 1584 IPR013087 -
Aip03g00191 1590 ProSiteProfiles JmjC domain profile. 192 361 IPR003347 -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1222 1305 - -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1333 1347 - -
Aip03g00191 1590 SUPERFAMILY beta-beta-alpha zinc fingers 1498 1534 IPR036236 -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1044 1058 - -
Aip03g00191 1590 SMART c2h2final6 1475 1497 IPR013087 -
Aip03g00191 1590 SMART c2h2final6 1528 1552 IPR013087 -
Aip03g00191 1590 SMART c2h2final6 1558 1584 IPR013087 -
Aip03g00191 1590 SMART c2h2final6 1498 1522 IPR013087 -
Aip03g00191 1590 Gene3D Classic Zinc Finger 1496 1582 - -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1357 1390 - -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1410 1448 - -
Aip03g00191 1590 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Aip03g00191 1590 SMART JmjN_1 17 58 IPR003349 -
Aip03g00191 1590 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1557 IPR013087 -
Aip03g00191 1590 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 1581 - -
Aip03g00191 1590 Coils Coil 1454 1474 - -
Aip03g00191 1590 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 5 1581 - -
Aip03g00191 1590 SMART cupin_9 192 361 IPR003347 -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 955 1066 - -
Aip03g00191 1590 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1552 IPR013087 -
Aip03g00191 1590 Gene3D Cupin 11 366 - -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1128 1150 - -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 702 725 - -
Aip03g00191 1590 ProSiteProfiles JmjN domain profile. 18 59 IPR003349 -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1161 1182 - -
Aip03g00191 1590 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 1103 1467 - -
Aip03g00191 1590 Pfam jmjN domain 19 52 IPR003349 -
Aip03g00191 1590 SUPERFAMILY beta-beta-alpha zinc fingers 1538 1582 IPR036236 -
Aip03g00191 1590 SUPERFAMILY Clavaminate synthase-like 103 357 - -
Aip03g00191 1590 ProSiteProfiles Zinc finger C2H2 type domain profile. 1558 1589 IPR013087 -
Aip03g00191 1590 MobiDBLite consensus disorder prediction 972 1042 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00191 Aip-Chr3 1925053 1933946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00191 1211 1589 C2H2 Transcription Factor Family AT3G48430 40.758 1.97e-71 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00191 JmjC 4.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00191 - - adu:107478986 2232.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00191 03 1925053 1933946 Aip03g00191 03 1925053 1933946 ECH