Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00186 ATGATATCAAGAAGCATTCTATTCTCTTTGGTTTTCTTGGTTTTCTCTTTTCTCATCCCTACCTTCATTTCCTCTTCCCCTCTCCAAGACCCTGAATTGGTAGTTCAAGAGGTGAATAGGCAAATCAATGCCTCCATTGCTAGGAGGAGCTTGTTAGCTAGTGATAGGAGAAACTTAGGGTACCTTTCATGTGGAAGTGGCAACCCCATTGATGATTGTTGGAGGTGTGATCCTAATTGGGAACAGAACAGACAGAAGCTAGCCGACTGCGCAATTGGGTTCGGAAAGAACGCAATTGGCGGTCGGGATGGTAAGATTTACGTGGTAGATGATTCTGAAGATGATGATCCAGTAAACCCTAAACCCGGAACCCTACGTCATGCAGTGATTCAGGACGAGCCATTATGGATCATATTCGCTAGGGATATGGTAATCAGACTGAAAGAAGAACTAATTATGAATTCTTACAAGACAATTGATGGAAGAGGAGCTAGTGTACACATTGCTAATGGTCCATGCATAACTATACAATATGTGACAAATGTGATTATACATGGAATTAACATACATGATTGTAAGCAAGGGGGGAATGCTATGGTGCGCGACTCTCCTAGGCACTACGGGTGGAGGACCGTATCGGACGGCGATGGCGTGTCGATCTTCGGTGGGGCCCACATTTGGGTGGACCATTGTTCATTGTCCAATTGCAATGATGGGTTGATTGATGCAATTCATGGGTCCACAGCAATCACAATATCTAACAATTACATGACACACCATGATAAGGTTATGTTGTTAGGTCATAGTGATGAATATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATACTTCCACGTGGTGAATAATGACTATACACATTGGGAGATGTATGCTATTGGAGGAAGTGCTAACCCTACCATTAATAGCCAAGGAAATAGATTTGTTGCACCCAATGATAGATTCAGCAAAGAGGTAACAAAGCATGAGGATGCAGCAGAGAGTGAATGGAAGAATTGGAATTGGAGATCAGAAGGGGACATGCTTGTTAATGGTGCATTCTTCACAGCTTCTGGTGCTGGTGCTTCTTCAAGCTATGCTAGGGCTTCTAGCCTCAGTGCTAGACCCTCTTCTCTTGTTGCTTCTATTACTACTTCTTCTGGTGCCCTTCTTTGCAAGAAAGGTTCTCCATGCTGA 1251 0.4341 MISRSILFSLVFLVFSFLIPTFISSSPLQDPELVVQEVNRQINASIARRSLLASDRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQKLADCAIGFGKNAIGGRDGKIYVVDDSEDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIRLKEELIMNSYKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGAHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAAESEWKNWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTSSGALLCKKGSPC 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00186 416 SMART amb_all 142 339 IPR002022 -
Aip03g00186 416 Pfam Pectate lyase 149 333 IPR002022 -
Aip03g00186 416 PANTHER PECTATE LYASE 11 413 - -
Aip03g00186 416 SUPERFAMILY Pectin lyase-like 68 407 IPR011050 -
Aip03g00186 416 Gene3D - 67 409 IPR012334 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 214 235 IPR018082 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 114 139 IPR018082 -
Aip03g00186 416 PRINTS Pollen allergen Amb family signature 150 166 IPR018082 -
Aip03g00186 416 PANTHER PECTATE LYASE 18-RELATED 11 413 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00186 Aip-Chr3 1874771 1877771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00186 1 416 Polysaccharide Lyase AT5G63180 77.327 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00186 K01728 - gmx:100787082 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01630 01 61241052 61243221 Aip03g00186 03 1874771 1877771 ECH
Aip03g00186 03 1874771 1877771 Aip03g00186 03 1874771 1877771 ECH