Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00180 ATGGCTTCACAAAATCCTATCTTCTTCTTGCTCTTACTCTTGTTATTCTTCTTCTTCTCCTCTTCAATCATCAAAGCCAAGCTTGATCTCCACCCTTCAGACCTCACCGCCTTTAAAACCCTCCAAAGAGACCTTGGTCTCAATGCACTTTTAGTCAACGGTCAACGCTTCCACCCATGCACCATCGATGGTGTGTTCTGCGAGAGAAGGCTCTCCACCAACGACACCGCCACAGCCACCTACGTCCTCCGCATCACGCGCCTTCTTTTCACCTCCAAGAATCTCAATGGAACCCTCTCTTCCGCCATTGGACACCTCACTGAGCTTAAAGAACTCTCTTTATCTGATAACCACCTCGTTGACCGCATCCCAAACTCCATAGTCAACCTCAAGAAGCTCGAAATCCTCGACCTCCGTGGCAACGGCTTCTCCGGCGAAGTCCCGCCTCGCCTTTCTTCGCTCGCAAGGCTCCGAGTCCTCGATGTCTCCTCCAACAAACTCTCCGGCAACCTCAACTTCCTCAAGTATTTTCCGAACTTGGAAAAGCTTAACGTCGCCGACAACCTCTTCGTTGGTCGTGTCCCGGTTTCCGTTCGCTCGTTTCGGAACCTCAGACACTTCAACTTCTCCGGCAACAGTTTCCTCGAAGGCTCGACGCCGATTGTCCCACGACGCTTCATCTTCGCCGAGGACGACGGAGAGAGCAACGACGGCATAACCGCTCTCGCGCCATCTCCGAGATCAAACAAAAGGAGGAGGAGGAGCTACTTTCCCAGCGCTTCTTCTCCGGCTCCCGGACCGGCACCCAACCACCATCACCACCACAATCACAGGAGAAAGATTCTCGGATGGATACTCGGTTTTCTTGCCGGAGCATTTGCCGGAATAATATCCGGTTTCATATTCTCATTGCTTTTCAAACTGACAAAGGCGTTACTGAAAAGAGGAGGCAAACGCGCCGGCGGCCCTGATATCTTCAGTCCTCTGATCAAGAAAGCCGAAGATTTGGCATTCTTGGAGAAAGAAGATGGTTTGGCGAACTTGGAACTCATCGGAAAAGGTGGCTCCGGCGAGGTTTACAAGGCGGAGTTGCCAGAAAGCGACGGAAAAATGATTGCCATAAAAAAAATCATCCAACCACCGAAGGATGCAACTGAAATGGAAGAAGAAGAAAGCAGAGACTTACACAAAAAAATGAGACAAATCCGATCAGAGATCAACACAGTCGGCCATATCAGACACCGGAATCTGTTACCCCTTCTTGCTCATGTTTCCCGCCCTGATTGCCACCTCTTGGTTTACGAATACATGAAGAATGGAAGCTTACAAGATTTGTTAAACAAAATTCAAGATGGAAATCAGGAACTGGATTGGTTATCAAGGCACAAGATCGCCATTGGAGTTGCTTCTGGACTTGAGTACCTTCACATGAGTCATAGTCCAAGAATCATTCACAGAGATCTCAAACCAGGAAACATTCTTCTTGATGATGATATGGAAGCTAGGATCTCCGATTTCGGTCTTGCAAAAGCAATGCCTGATGCTCAAACTCACATTACTACTTCCAAAGTTGCTGGTACAGTTGGTTATATTGCACCAGAGTATCACCAGATTCTTAAATTCACTGATAAGTGTGACATTTTCAGCTTTGGGGTGGTGCTTGGAGTTTTAGTGACGGGAAAACTTCCCTCTGATGACTTCTTCCAACACACGGATGAGATGAGTATAGTGAAATGGATGAGGAAGGTTATCATCTCGGAGACTCCAAAGGAAGCCATTGATGAGAAGCTTCGTGGGAATGGTTTTGAGGAGCAAATGCTTCTTGTTCTTAAGATTGCATGCTTTTGCACTATGGATGATCCTAAGGAGAGACCTAATAGCAAGGAAGTTAGGACGACCAGACAACGCCGACGCCAAAAGCTTCATAGTTCAGACGACCAGACGACGACGTCGCTGACAGCATCTTTGATCCGCGACGGTGAGTTCCTTCTGCCCGCTAACAGCAGCTTCGATCTGGCATCGATTGTGGTAAGGACGATGGAGTTCGTTGGAGGAAGACTAGAAGACGAAATTAGGGTTGAGGATGTGTGGTGA 2094 0.4814 MASQNPIFFLLLLLLFFFFSSSIIKAKLDLHPSDLTAFKTLQRDLGLNALLVNGQRFHPCTIDGVFCERRLSTNDTATATYVLRITRLLFTSKNLNGTLSSAIGHLTELKELSLSDNHLVDRIPNSIVNLKKLEILDLRGNGFSGEVPPRLSSLARLRVLDVSSNKLSGNLNFLKYFPNLEKLNVADNLFVGRVPVSVRSFRNLRHFNFSGNSFLEGSTPIVPRRFIFAEDDGESNDGITALAPSPRSNKRRRRSYFPSASSPAPGPAPNHHHHHNHRRKILGWILGFLAGAFAGIISGFIFSLLFKLTKALLKRGGKRAGGPDIFSPLIKKAEDLAFLEKEDGLANLELIGKGGSGEVYKAELPESDGKMIAIKKIIQPPKDATEMEEEESRDLHKKMRQIRSEINTVGHIRHRNLLPLLAHVSRPDCHLLVYEYMKNGSLQDLLNKIQDGNQELDWLSRHKIAIGVASGLEYLHMSHSPRIIHRDLKPGNILLDDDMEARISDFGLAKAMPDAQTHITTSKVAGTVGYIAPEYHQILKFTDKCDIFSFGVVLGVLVTGKLPSDDFFQHTDEMSIVKWMRKVIISETPKEAIDEKLRGNGFEEQMLLVLKIACFCTMDDPKERPNSKEVRTTRQRRRQKLHSSDDQTTTSLTASLIRDGEFLLPANSSFDLASIVVRTMEFVGGRLEDEIRVEDVW 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00180 697 SMART serkin_6 345 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00180 697 Gene3D Transferase(Phosphotransferase) domain 1 437 658 - -
Aip03g00180 697 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Aip03g00180 697 SUPERFAMILY Protein kinase-like (PK-like) 341 632 IPR011009 -
Aip03g00180 697 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 12 633 - -
Aip03g00180 697 SUPERFAMILY L domain-like 57 216 - -
Aip03g00180 697 Gene3D Phosphorylase Kinase; domain 1 335 436 - -
Aip03g00180 697 MobiDBLite consensus disorder prediction 622 647 - -
Aip03g00180 697 MobiDBLite consensus disorder prediction 237 275 - -
Aip03g00180 697 Pfam Protein kinase domain 347 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00180 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Aip03g00180 697 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 633 - -
Aip03g00180 697 ProSitePatterns Protein kinases ATP-binding region signature. 351 376 IPR017441 GO:0005524
Aip03g00180 697 CDD STKc_IRAK 351 630 - -
Aip03g00180 697 Gene3D Ribonuclease Inhibitor 33 222 IPR032675 -
Aip03g00180 697 ProSiteProfiles Protein kinase domain profile. 345 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00180 Aip-Chr3 1820662 1825949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00180 10 632 Receptor kinase-like Gene Family AT2G31880 60.952 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Aip03g00180 Pkinase 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00180 - - aip:107629358 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00180 03 1820662 1825949 Aip03g00180 03 1820662 1825949 ECH