Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00177 ATGATATTTTTGGTGTTCTTAAGAATCACCGTAAACCCTTTTTCATTTTGCTTTCAATTCCCACCCCCTCCTTCCTTATCCTCATTTCCTTCAATTCAAAACCCTTTCTCTTCTTCTCTCTGTTCTTACAGTTACATGTCTATCATCACTGGCTTCAAATCCCTAACTACCATGGCAGAATCATGCCTTCTCTCTCCTCCTTCTTCTCTCTTCCATTCCAAACACATCACCCATTCAAATTCCAAACCCCACCACCACACTCTCTTCAAACTCGCTTGCCCATTCCCTTCCCTCTCTCTTTCTCTCACCGCAAGGCGCCATCATCACGTGCTCACTCACGTGGCCCAAACCTCCGACTGGGCCCAGCAAGAGGAAGACAACACTCTCACCTTGGAACAGCAAGAAGCTGAAGAACCTGCACTTTCAGATTGGGAACCCAGCGCTGAAATCGTAGGCGAAGCTGAAGTTGCTGAAGCCGAAGACGCAGACGAAGAAGAAGAAGAAGGAGAAGAAGAAGGAGGGGATTTTGTTGAGCCACCAGAGGAAGCGAAAATCTTCGTTGGAAACTTGCCTTATGACGTTGATAGCCAGAAACTCGCCATGCTTTTCGAGCAAGCTGGAACCGTTGAAATTGCCGAGGTTATTTACAACAGGGACACTGACCAGAGTCGCGGGTTTGGCTTCGTGACGATGAGTACTGTCGAGGAAGCTGAGGCTGCTGTGGATAAGTTCCACCGCTATGATTTAGGTGGAAGACTGTTGACTGTTAACAAGGCTTCTCCAAGAGGAGAACGACCTGAACGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGCCTTGGGATGTTGACAATGGTCGCCTGGAGCAGATTTTCAGCGAACACGGTAAGGTTGCGAATGCTCGCGTAGTGTATGACAGAGAGACTGGACGATCACGCGGCTTTGGTTTTGTCACAATGACCGACGAGAGTGAAATGAATGATGCAATTGCTGCTCTTGATGGCCAGAGTTTGGATGGAAGGGCAATAAGAGTGAATGTTGCTGAGGACAGACCCAGACGCTCTTTTTGA 1086 0.4797 MIFLVFLRITVNPFSFCFQFPPPPSLSSFPSIQNPFSSSLCSYSYMSIITGFKSLTTMAESCLLSPPSSLFHSKHITHSNSKPHHHTLFKLACPFPSLSLSLTARRHHHVLTHVAQTSDWAQQEEDNTLTLEQQEAEEPALSDWEPSAEIVGEAEVAEAEDADEEEEEGEEEGGDFVEPPEEAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEAAVDKFHRYDLGGRLLTVNKASPRGERPERPPRSFEQAFRIYVGNLPWDVDNGRLEQIFSEHGKVANARVVYDRETGRSRGFGFVTMTDESEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00177 361 SMART rrm1_1 184 257 IPR000504 GO:0003723
Aip03g00177 361 SMART rrm1_1 278 351 IPR000504 GO:0003723
Aip03g00177 361 SUPERFAMILY RNA-binding domain, RBD 270 359 IPR035979 GO:0003676
Aip03g00177 361 CDD RRM_HP0827_like 278 354 - -
Aip03g00177 361 PANTHER OS02G0815200 PROTEIN 50 360 - -
Aip03g00177 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Aip03g00177 361 MobiDBLite consensus disorder prediction 119 135 - -
Aip03g00177 361 MobiDBLite consensus disorder prediction 154 177 - -
Aip03g00177 361 SUPERFAMILY RNA-binding domain, RBD 179 272 IPR035979 GO:0003676
Aip03g00177 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 349 IPR000504 GO:0003723
Aip03g00177 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Aip03g00177 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 261 IPR000504 GO:0003723
Aip03g00177 361 PANTHER RIBONUCLEOPROTEIN 50 360 - -
Aip03g00177 361 MobiDBLite consensus disorder prediction 119 180 - -
Aip03g00177 361 Gene3D - 267 360 IPR012677 -
Aip03g00177 361 Gene3D - 113 266 IPR012677 -
Aip03g00177 361 CDD RRM_HP0827_like 184 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00177 Aip-Chr3 1788991 1792102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00177 181 359 Eukaryotic Initiation Factors Gene Family AT3G16380 35.938 1.54e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00177 - - ahf:112736327 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01617 01 60364781 60368558 Aip03g00177 03 1788991 1792102 ECH
Aip03g00177 03 1788991 1792102 Aip03g00177 03 1788991 1792102 ECH