Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00148 ATGGCTACTGCGACTTCTCCCACTGTTCCTATGGAAGAAGAAGATGACGTCACAGCCACAGCCACAGCCACAAACCAAAACCTTCAAACTCATCAAAACGGCGTCGTTCCTTCTTCTCCCATGCTTCCCGTTTCCGACGACAAAATCCTTCTCCCTGTTGAGGTCTGCTTGAAGCCTTCCAGCACTGCTTCTATCCGTGACGTTCGTTCCGCTATCGAAAGGATGCTTGAGAAGAGGAGTTTGAGCTATTGTGATGGCCCCATTCCTCTCCCCATGGACGAGCCCTTTCTCGCCGACAACGTCCACAGAATTTGTATTTGTGACACAGATGAAGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCAGTTGTCCATGTCTTTCAGCTTAGCGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGCCAGAGTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGTTTAATATTCGAATCTGGTCTAAAGCAAAGGTTGTTACGTTATGCAGCTAGTGCTTTGCTCTTTACTGAAAAAGGTGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTTCTACATGGACCCCCTGGGACTGGAAAGACTTCGTTGTGTAAAGCATTAGCTCAGAAATTATCGATTCGATTCAATTCAAGATTCCCACAGTGCCAGCTTATTGAAGTGAATGCACATTCTTTATTCAGTAAATGGTTTTCTGAAAGTGGCAAGCTGGTTGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCGGCCAGGAAAGCTGCTATATCCGGTTCAGAACCTTCAGATTCTATTCGGGTTGTAAATGCATTACTAACTCAGATTGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACATCCAACATAACTGCTGCTATTGATATTGCTTTTGTCGACCGAGCTGATATTAAAGCATATATTGGTCCCCCGACACTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAATTGATGCGTACGGGGATCTTAACTAGTTTACAGGGTTGTGATAACACCACACTTCCAAGTTATGCCAGTGCAAAGGATAGGTCGAGTGCACCGGATTTTCATGAGGTTACTGCATCCATGCAACTATGCAACCAACTTCTTGAAACTGCCAAGGCCTGTGAGGGAATGAGTGGGAGGTCCTTGAGAAAGCTTCCATTTTTGGCACATGCTGCCCTTGCCAATCCTTTCCATTGCAACCCTATTAAGTTCTTATGTACAATGATTGAAACGGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1401 0.4361 MATATSPTVPMEEEDDVTATATATNQNLQTHQNGVVPSSPMLPVSDDKILLPVEVCLKPSSTASIRDVRSAIERMLEKRSLSYCDGPIPLPMDEPFLADNVHRICICDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAAISGSEPSDSIRVVNALLTQIDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYIGPPTLQARYEILRSCLQELMRTGILTSLQGCDNTTLPSYASAKDRSSAPDFHEVTASMQLCNQLLETAKACEGMSGRSLRKLPFLAHAALANPFHCNPIKFLCTMIETAKRERSELPD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00148 466 SMART AAA_5 200 352 IPR003593 -
Aip03g00148 466 Pfam ATPase family associated with various cellular activities (AAA) 204 349 IPR003959 GO:0005524|GO:0016887
Aip03g00148 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 434 IPR027417 -
Aip03g00148 466 ProSitePatterns AAA-protein family signature. 322 341 IPR003960 GO:0005524|GO:0016887
Aip03g00148 466 CDD AAA 202 350 - -
Aip03g00148 466 Gene3D - 143 367 IPR027417 -
Aip03g00148 466 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 204 222 IPR001270 GO:0005524
Aip03g00148 466 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 318 332 IPR001270 GO:0005524
Aip03g00148 466 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 42 463 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00148 Aip-Chr3 1459901 1464986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00148 204 377 Calmodulin-binding Proteins AT3G56690 29.545 1.04e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00148 K22399 - gmx:100795009 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00148 03 1459901 1464986 Aip03g00148 03 1459901 1464986 ECH