Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00139 ATGGGTCGGCATTCTTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTCTTCAACTACATTTCTAGGTTTGGTGTTGGTTGCTGGAGTTCAGTTCCCAAACAAGCTGGGCTACAAAGATGTGGAAAGAGTTGCAGACTAAGATGGATAAATTATTTGAGGCCTGATTTGAAGAGAGGCATGTTTTCTCAACAAGAGGAGGATCTTATAATCACTCTCCATGAGGTTCTTGGAAATAGGTGGGCACAGATTGCGGCACAGTTGCCAGGAAGAACAGATAATGAGATAAAGAATTTCTGGAATTCATGTCTGAAGAAGAAGCTAATGAAGCAAGGGATTGATCCAACTACACACAAGCCTCTTCATAATCATGAAGACAAAGATAATGATACTATTATTAATAATAATAATAATAATAATACAACACAAGCAGCATGTTCTTCTTCTTCTTCCATGGCAATGTTAGATGGAATTATTGGAGGAGTTTCATCATCATTATCATCATCATCATTATTATTAGACCCTTTGACATGCTTGGATTTTTCTCATCATCATGAAAACTATGGATTATTATTCTCTTCAATGCCAAGCCTAGACATGAATAATAATAATAATAATAATGCATTGCTCTCATCAACATCATCATGGGATTGTTGTAGCAATGAAGAGGAGAACAAGTTAGAATCTTTGTTTCAGTTTCATCATCAACTCAAATCTGAGGAGGAATTCAATACAAATTATAATAATAATGTGCAGCAGAATTCAATGCAAGAAGATTTCATGAGCAGCTATAATAATTTAAGGTCACTCTCATCAGAAGATCTATCAGCAGCAGCAGCAGCAGTAGCAGGACCAAATTTTGATGTATTCCACCAGATATGA 906 0.3598 MGRHSCCLKQKLRKGLWSPEEDEKLFNYISRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIITLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLHNHEDKDNDTIINNNNNNNTTQAACSSSSSMAMLDGIIGGVSSSLSSSSLLLDPLTCLDFSHHHENYGLLFSSMPSLDMNNNNNNNALLSSTSSWDCCSNEEENKLESLFQFHHQLKSEEEFNTNYNNNVQQNSMQEDFMSSYNNLRSLSSEDLSAAAAAVAGPNFDVFHQI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00139 301 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Aip03g00139 301 CDD SANT 70 109 IPR001005 -
Aip03g00139 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip03g00139 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aip03g00139 301 CDD SANT 17 61 IPR001005 -
Aip03g00139 301 Gene3D - 68 148 - -
Aip03g00139 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aip03g00139 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g00139 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip03g00139 301 PANTHER MYB DOMAIN PROTEIN 55 1 156 - -
Aip03g00139 301 SMART sant 66 114 IPR001005 -
Aip03g00139 301 SMART sant 13 63 IPR001005 -
Aip03g00139 301 Gene3D - 11 67 - -
Aip03g00139 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip03g00139 301 PANTHER MYB-RELATED PROTEIN HV33-LIKE 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00139 Aip-Chr3 1365224 1367017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00139 1 165 MYB Transcription Factor Family AT4G01680 70.303 2.36e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g00139 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00139 K09422 - gmx:100799243 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00139 03 1365224 1367017 Aip03g00139 03 1365224 1367017 ECH