Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00135 ATGTTTCTTCAATTCTTCTTGGGTCTTGGCTTGAAGTTTAGTTCTGAAATTTGGTTCTTCAGTTCTTCTTCTTGGGTCTTCGGTCTTTGTTCTTCGGTCTTCTTTGTATGTATGGTTCTGATTGCTGTGGAAATTTATATTCTTCAGCAGCACAGGAAGCACCGCGAAGTTGTAGGAGGCGCCTTCAGAAAGTTTTGGCGCGTTCTACCTGTTGATAACGTTACACCATTGCCCACCGCCTCAAGCATGAGTTCTCCAGGATCATCCTCAACCTCAAGAGTTTCAGTAGAAGGGCAAGCCCCATTGCCAAAGCCAGCTGATCCTGCAGCAAACTTATCGAGCAATGAGATTGCACCACTTTCAAGAAATCCATTCTTTCATGTAGTTCTTTCAAAATCACATGTTCGTCGTAGTTGTCTCATGGGGCCATCAAAGGACTTAATAGATATACTTCCATCTGCTGAGGTCCCTACTGTTCTTAAGTGTGGAGGCGAGAGCTGGGACATGGTGTATCGTGGACATGCTCCGGGTCGCAAGTTCTTCGATGGAGGCTGGAGAAAATTTGTCAAAGCTAATTGCTTGGTGGAGGGAGATGCTTGTGTTTTCGAGCTCATGGCAAACAGTGATGAGAAAATTGTCTTTGAAGTTCAAATTCTCAGAGGTGATCTCCCCGAAGTGTTTTTTAAAAGGGATAGAATTGGTGCAAGTGAACAGAAGCCGATTGTCATTGACTAG 735 0.4435 MFLQFFLGLGLKFSSEIWFFSSSSWVFGLCSSVFFVCMVLIAVEIYILQQHRKHREVVGGAFRKFWRVLPVDNVTPLPTASSMSSPGSSSTSRVSVEGQAPLPKPADPAANLSSNEIAPLSRNPFFHVVLSKSHVRRSCLMGPSKDLIDILPSAEVPTVLKCGGESWDMVYRGHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEVQILRGDLPEVFFKRDRIGASEQKPIVID 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00135 244 MobiDBLite consensus disorder prediction 79 97 - -
Aip03g00135 244 ProSiteProfiles B3 DNA-binding domain profile. 125 222 IPR003340 GO:0003677
Aip03g00135 244 MobiDBLite consensus disorder prediction 79 100 - -
Aip03g00135 244 Gene3D - 109 222 IPR015300 -
Aip03g00135 244 SMART B3_2 126 222 IPR003340 GO:0003677
Aip03g00135 244 SUPERFAMILY DNA-binding pseudobarrel domain 121 220 IPR015300 -
Aip03g00135 244 CDD B3_DNA 124 220 IPR003340 GO:0003677
Aip03g00135 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 83 227 IPR044837 -
Aip03g00135 244 Pfam B3 DNA binding domain 126 215 IPR003340 GO:0003677
Aip03g00135 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 83 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00135 Aip-Chr3 1269033 1272712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00135 123 220 REM Transcription Factor Family AT1G49480 36.634 2.32e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip03g00135 B3 1.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00135 - - adu:107474771 301.982