Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00097 ATGGAGGGAGGAGCGCCGCAATCCACCGGAGGAGGAGCAGGAGGTGGACCGGCGCCGTTCTTGTTGAAGACTTATGACATGGTTGACGATTCCGCCACCGATGACATCGTTTCTTGGAACAGCTCCACCAACAACAGCTTCGTTGTTTGGAACCCGCCGGAGTTCGCGCGCCTTCTTCTACCTACCTATTTCAAGCATAACAACTTTTCTAGCTTCATCCGCCAGCTTAATACCTATGGATTTCACAAAATACATCCTGAACGGTGGGAGTTTGCCAATGATGATTTTATAAAAGACCAAAAGCATCTTCTTAAGAATATCCACCGCCGGAAACCTATTCACAGTCATAGTCATCCTCCCGGCTCTGTTGTGGATCCAGAAAGGGCAGCATTTGAGGAAGAAATTGAAAAACTTAACCGTGAGAAATCTTCTATTGAATCTAATATTTTCAGCTTCAAGCAACATCAGTCAACAGCGAAGATTCATCTAGAAGATTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAACATTTGCTGAACATTTTCGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAGCAGCTTTCCCAGAAAATTGAGTCCATTGATTTATCAGCGTATAACAAGAAAAGACGATTGCCTCAAGTTGATGACATGCAACCTGTTGTAGAAAGTAGTTTTGTGGACAATCCTAACAATTTTAGAATGGAATTCGGGAATGTTTTTCATCAAGATTTCTCGAACAAACTCAGACTGGAATTGTCACCAGCTGTGTCAGATATGAACTTAGTGTCACGTAGCACACAAAGTTCAAATGAACATGGGGAAAGTCCACAGAAGAAAATATCTGAAGGAGAACAAACAGGAATCCAGACAAGAACATCTGTTCCATTTGCACCAGAAACATTGGAGCTTGCTGATACCGGGGCATCTTTTACTTTCAAGATGGATTCATGTTTATCACAAAGAGTGACGAATGCTGAGAGCCCGAAACTGTGCTCATTGGAGCCAAGTAGTGAAGAAGGTGATAGTCACATATCCTGCCAACTTACTTTGGCATCGTGCCCGTTTAAGGTCAACAGAAATTCATACTCAGCAAAAGCACTCCAAATAGACTCTCAAGAAATTGGCAAGCTGGCAGAGCCTAGGTTTCATTCCAACAGTAAAGAATCCGACGGTGGAGTTTTCTCAAACCGGAACGGAGCTAATGATGCAACCAATTTGGCTTCTTCACTGGAAACTCCAAGTAACAACCAAGTTACTCAGCCAAACAGGGTAAATGATGTGTTTTGGGAACAGTTCCTTACTGAAAGACCAGGCTGCTCAGACAATGAAGAGGCAATATCCAATTACAGAGGAAACCCATGCGATGAGCAAGATGAAGGAAGGTTGAATGCAAGGAATGTTAAGAACATGGATCAGCTTACACTTTAA 1440 0.4292 MEGGAPQSTGGGAGGGPAPFLLKTYDMVDDSATDDIVSWNSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLNREKSSIESNIFSFKQHQSTAKIHLEDFQQRLDGMEKRQKHLLNIFEKALQNPTFVEQLSQKIESIDLSAYNKKRRLPQVDDMQPVVESSFVDNPNNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEHGESPQKKISEGEQTGIQTRTSVPFAPETLELADTGASFTFKMDSCLSQRVTNAESPKLCSLEPSSEEGDSHISCQLTLASCPFKVNRNSYSAKALQIDSQEIGKLAEPRFHSNSKESDGGVFSNRNGANDATNLASSLETPSNNQVTQPNRVNDVFWEQFLTERPGCSDNEEAISNYRGNPCDEQDEGRLNARNVKNMDQLTL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00097 479 MobiDBLite consensus disorder prediction 384 426 - -
Aip03g00097 479 MobiDBLite consensus disorder prediction 266 300 - -
Aip03g00097 479 MobiDBLite consensus disorder prediction 266 302 - -
Aip03g00097 479 Pfam HSF-type DNA-binding 20 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00097 479 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 474 IPR027725 -
Aip03g00097 479 Gene3D - 15 111 IPR036388 -
Aip03g00097 479 Coils Coil 163 183 - -
Aip03g00097 479 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 13 474 - -
Aip03g00097 479 SMART hsfneu3 16 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00097 479 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Aip03g00097 479 Coils Coil 128 148 - -
Aip03g00097 479 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00097 479 MobiDBLite consensus disorder prediction 392 426 - -
Aip03g00097 479 MobiDBLite consensus disorder prediction 454 479 - -
Aip03g00097 479 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00097 479 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00097 479 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00097 Aip-Chr3 890239 892908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00097 20 479 HSF AT4G13980 55.532 2.78e-162 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip03g00097 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00097 K09419 - gmx:100786408 756.133