Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00079 ATGGCAGCACAAAGTTCTGATGCTTGTCCTTCTGAATCCTCTAGCATCTCTGCCACCTTCCAAGGGATTGATAACAACACAAGGGACAATGATCTAGCTTCTGAACCAGACCAAGCCTCAAATTCCAATAATAATATGGAAAGGATGTTGGATTTTGTGAAGCTCTCCAACAACGATGTTTCATCGATTCGATGTTCTTCCAACGTGAAAGAGCTTGATTTTTTCAACACCGGGAAGAGGGTGATGGGATCATCGTCAACTTGGACTAATAATAATAATGTTGACGAAGGAAAAGATGAAAACACTGAAGAAAAAGAAAGGACTTCAGAGCCGAAAACTTTCTCTTGCAATTTTTGCAAGAGAGAGTTCTCGTCCTCTCAAGCCCTTGGTGGGCACCAAAATGCCCACAAACAAGAGCGTGCGATAGCGAAACGTCGCCAAGGGATGGACACGGGTGCTTTTGGTCACCCTCACTTTCCATATTATCCTTACCATAGCTTTTTCACACCATCTTTATATGGGTCCTATAATAGGACACTTGGGGTAAGAGTGGAGTCTATGATTCACAAACCTTCTTATCCTTGGTCTGCTGGTCTTAGGTTTGGTCGTAATCATAATTGGTCAACGCAGAGGATTCTTGGTTCATCATCATCATTAGCACTTGATAGGTTAAGTATTGAGGGTTTGCAACCAAATAATGAAGTAGGCGGGGTTAGTGGAATTCAAGCAAGTTCTTCGAATTTGAGAAAAGAAGATGATAATGGTGGTAATGGAAATACTTCCCAATTAGGAGATTCTTCTACCAACAATGTTGCTACAAGTCTCACTTGCCATGCAAAGGATGATCAGGATCCCAAGCCAGATAATGAACCCTCTAGTTCTGAGTCTCCGGGGCTTGATTTGTCACTTAAGCTTTAA 918 0.4205 MAAQSSDACPSESSSISATFQGIDNNTRDNDLASEPDQASNSNNNMERMLDFVKLSNNDVSSIRCSSNVKELDFFNTGKRVMGSSSTWTNNNNVDEGKDENTEEKERTSEPKTFSCNFCKREFSSSQALGGHQNAHKQERAIAKRRQGMDTGAFGHPHFPYYPYHSFFTPSLYGSYNRTLGVRVESMIHKPSYPWSAGLRFGRNHNWSTQRILGSSSSLALDRLSIEGLQPNNEVGGVSGIQASSSNLRKEDDNGGNGNTSQLGDSSTNNVATSLTCHAKDDQDPKPDNEPSSSESPGLDLSLKL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00079 305 MobiDBLite consensus disorder prediction 85 109 - -
Aip03g00079 305 MobiDBLite consensus disorder prediction 1 46 - -
Aip03g00079 305 MobiDBLite consensus disorder prediction 235 277 - -
Aip03g00079 305 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Aip03g00079 305 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 305 - -
Aip03g00079 305 Gene3D Classic Zinc Finger 90 153 - -
Aip03g00079 305 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Aip03g00079 305 PANTHER ZINC FINGER PROTEIN JAGGED 5 305 IPR045320 GO:0003700
Aip03g00079 305 MobiDBLite consensus disorder prediction 230 305 - -
Aip03g00079 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00079 Aip-Chr3 733856 734773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00079 108 208 C2H2 Transcription Factor Family AT5G10970 51.456 3.58e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00079 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00079 - - ahf:112735686 520.005