Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00078 atgacattaagagctgaaacattatcaagaatgaaacgacttgaatttctcgaaataaaaagtgttagtttttctggaagttttaatagcatttctagcgaattgcgatatctcgagtgggaagaatatccgtttacgtattttccatcatgttgtaagctatccaagcttgtgaaattagtcttgcaaaagagcaacatcaagcaactatgggatggcacaatgtgtccggacaatttgaaggaattggatctctctgactccaaaaatcttgtgaagactccaaaccttagccaggctccaaatcttgaggtgctgatccttagagaatgtagaaagcttaagcacatacatccatcaactggagacctaagaaaacttgttgagttagatttgagtgagtgcacaagtttaatgagcttccccatcactgtattcggtatatcttcactaaaatatgttaatctgagcgggtgctcaagattatttagtgggaaagagctggaaaatggaagtgagagtggtatccaatgccaatcgacagtatggtccacttttaaaaggcttaagcttaggttaccattccatttcttcaattcttctaaaagtagatacaaccatgtgttccgtctgtggaggctttctgtggctcgcttaagctgcgtgtattctcttgacctaagttattgtaatctgcatactatccctgaggccatatcatccttacattatttagagatcttagatttcaggggaaacaatatagttagagtacctgatttcataaacaagcttcccagactgatagtgttgaagttagataactgcaaacggctaatgtATGTAGATGAGTTCCCGTTGCCATTCCCCTATCCAGCGGTAGAGCGAACAAAACTTGTGAAATGGGGAGAATTGAGGATGTGGAACTGCCCGAAAATAGTAGAGAAGGAAAGGCTGAGTGGAATGGGTAGTTCATGGATGAGAGAGTACATTAAGGTACACAATGAATCCCTTGGTAGACTTGCTATTGTAATTCCAGGGAGTggagctccaattccaaggtggtttaagcatcagaataagggggcagataattcaatgtggatagaatcatttccgaatgccaatgacaatgattggattggcattgccctttgtgCCGAGATTCTTGTTCAGTTTGCACCACCCGTTGCCATTGAGCTCTACTTTTACGACCAAACAGAAAAAGTCAATCTCAAGCACCTTGTTTGTCTTGAAAAGGAGGAGGAGGTGAGGGGTGAATTGGTTCACCTCTGCCTATTCTATTTTTCTCGCCAACTACTCATTCGGGATGGAAAGCAGCATGATCTTGATGGATCCCGCTTTGAATTCAAAGAATTTAACCACCGCTATGTGGAAGTGAAGAAGTGGGGAATGCGTGTGGTACTGAACCAGGATTTGGAGTAA 1446 0.1521 MTLRAETLSRMKRLEFLEIKSVSFSGSFNSISSELRYLEWEEYPFTYFPSCCKLSKLVKLVLQKSNIKQLWDGTMCPDNLKELDLSDSKNLVKTPNLSQAPNLEVLILRECRKLKHIHPSTGDLRKLVELDLSECTSLMSFPITVFGISSLKYVNLSGCSRLFSGKELENGSESGIQCQSTVWSTFKRLKLRLPFHFFNSSKSRYNHVFRLWRLSVARLSCVYSLDLSYCNLHTIPEAISSLHYLEILDFRGNNIVRVPDFINKLPRLIVLKLDNCKRLMYVDEFPLPFPYPAVERTKLVKWGELRMWNCPKIVEKERLSGMGSSWMREYIKVHNESLGRLAIVIPGSGAPIPRWFKHQNKGADNSMWIESFPNANDNDWIGIALCAEILVQFAPPVAIELYFYDQTEKVNLKHLVCLEKEEEVRGELVHLCLFYFSRQLLIRDGKQHDLDGSRFEFKEFNHRYVEVKKWGMRVVLNQDLE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00078 481 SUPERFAMILY L domain-like 6 283 - -
Aip03g00078 481 Pfam C-JID domain 349 481 IPR045344 -
Aip03g00078 481 Gene3D Ribonuclease Inhibitor 183 325 IPR032675 -
Aip03g00078 481 Gene3D Ribonuclease Inhibitor 2 175 IPR032675 -
Aip03g00078 481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 480 IPR044974 GO:0006952
Aip03g00078 481 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00078 Aip-Chr3 729115 733432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00078 18 278 WRKY Transcription Factor Family AT4G12020 33.212 1.10e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00078 - - ahf:112792657 818.15