Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00071 ATGGCGGGGGTTTCTCTCAAGTGTGGTGACTGTGGCACTCTGTTGAGGTCCGTAGAGGAAGCGCAACAGCATGCAGAGCTCACCAACCACTCCAACTTCTCCGAATCCACCGAAGCAGTTCTCAACCTCGTCTGCACTGCTTGCGGCAAACCCTGCCGATCCAAAACCGAAAGTGATTTGCATACGAAAAGAACCGGGCATACTGAGTTTGTAGATAAGACTTCCGAGGCAGCCAAACCGATAAGTTTAGAGGCTCCAAAAGTGGATGAAGCTGCTACCTCAGAAGAGGCTCTCAATGCAGATGCAAGCCAAGATGCAGAAATGGTTGTTCCTGAGGTTGACAAAACGATTGTTGAGGAACTTGAAGTAATGGGATTTTCTACAGCTCGAGCAACACGTGCACTTCATTATTCTGGTAATGCTAGCATCGAGGCTGCCATAAATTGGATAGTAGAGCATGAGTCTGACCCTGACGTAGATCAGATGCCCTTGGTACCTGCCAATACCAAAGTTGAGGCTCCTAAACCTTCTCTTACCCCAGAAGAACTGAAGGCTAAACAACAGGAGCTAAGGGAGAAAGCTCGCAAGAAGAAAGAAGAGGAAGAAAGGAGAATGGAAAGAGAAAGAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTAGAAGCAAAGAGGATCGAAGAAGAGAATGAGAGAAAACGGTTGCTGGCATTGCGAAAAGCAGAAAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAGAAGTTAGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTTGGATTGCCTCCGGAGGAACCTGCAGAAGCCAAACCCTCAACTGTTGTAGAGGAGAAAAAGAGTTTTCTGCCAGTTAGGCCTGCCACCAAAGCGGAACAAATGAGAGAGTGCCTGCGTTCTCTCAAGCAGAACCACAAGGAGGACGATACCAGAGTAAAGAAAGCATTCCAAACCCTCCTTACTTATGTGGGAAATGTTGCCAGAAATCCTGACGAGGAAAAATTCAGAAAAATCCGACTTAGTAACCAAACTTTTCAGGAACGAGTTGGTGCCTTGAAGGGGGGCATTGAATTTCTGGAGATTTGTGGATTTGAGAAGATTGATGGTGGTGAGTTTTTGTTTTTGCCCAGGGACAAAGTTGAGATGGCAGTTCTGAATTCAGCTGGGTCTGAACTAGACTCTGCAATTAAGAATCCCTTCTTTGGAGTTCTATAG 1239 0.4617 MAGVSLKCGDCGTLLRSVEEAQQHAELTNHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEAPKVDEAATSEEALNADASQDAEMVVPEVDKTIVEELEVMGFSTARATRALHYSGNASIEAAINWIVEHESDPDVDQMPLVPANTKVEAPKPSLTPEELKAKQQELREKARKKKEEEERRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPEEPAEAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDTRVKKAFQTLLTYVGNVARNPDEEKFRKIRLSNQTFQERVGALKGGIEFLEICGFEKIDGGEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00071 412 MobiDBLite consensus disorder prediction 255 287 - -
Aip03g00071 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Aip03g00071 412 Coils Coil 218 263 - -
Aip03g00071 412 Pfam UBA/TS-N domain 116 150 IPR015940 -
Aip03g00071 412 MobiDBLite consensus disorder prediction 177 211 - -
Aip03g00071 412 Pfam PUB domain 319 389 IPR018997 -
Aip03g00071 412 MobiDBLite consensus disorder prediction 255 284 - -
Aip03g00071 412 CDD UBA_PUB_plant 112 160 - -
Aip03g00071 412 Coils Coil 180 215 - -
Aip03g00071 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Aip03g00071 412 CDD PUB_UBA_plant 306 412 - -
Aip03g00071 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Aip03g00071 412 SMART uba_6 114 152 IPR015940 -
Aip03g00071 412 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Aip03g00071 412 Gene3D - 114 159 - -
Aip03g00071 412 SUPERFAMILY PUG domain-like 294 408 IPR036339 -
Aip03g00071 412 MobiDBLite consensus disorder prediction 170 211 - -
Aip03g00071 412 Gene3D - 300 402 - -
Aip03g00071 412 SUPERFAMILY UBA-like 98 166 IPR009060 GO:0005515
Aip03g00071 412 SMART PGNneu 322 385 - -
Aip03g00071 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 112 153 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00071 Aip-Chr3 629945 634893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00071 99 412 C2H2 Transcription Factor Family AT1G04850 78.997 1.80e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00071 K24348 - gmx:100794687 636.721