Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00038 ATGGGTGCATCGTCACACAAATGGTTGAGAACTATTCGGAGGAAGTTCCTTAGATCATTCAACAAAGACAACATCATCACTACTCTACCTTACACAAGAAGAAACCAACTCGAAGAAAATGATAATGAAGCCACCATAGGAAGCAACAATGAAGAAGAAACCACCACCATAGCTAAGGAAGATCTTGCGGCAATCAAGATCCAAGCTTATTTTAGGGGTCATCTTGCAAGAAGAGCATATGGAGGTCTTAGAAGCATTGTGAAGGTGCAAGCATTGGTGCGTGGTGTTTTTGTGAGGAAACAATCACATATTGCTATGCAATCTCTGCTCTGTTCAACTGGAGCTATAATTCAGGTACAACTTGAAGCTTAG 372 0.4113 MGASSHKWLRTIRRKFLRSFNKDNIITTLPYTRRNQLEENDNEATIGSNNEEETTTIAKEDLAAIKIQAYFRGHLARRAYGGLRSIVKVQALVRGVFVRKQSHIAMQSLLCSTGAIIQVQLEA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00038 123 ProSiteProfiles IQ motif profile. 60 88 IPR000048 GO:0005515
Aip03g00038 123 PANTHER OS04G0561100 PROTEIN 6 109 - -
Aip03g00038 123 Gene3D - 58 108 - -
Aip03g00038 123 Pfam IQ calmodulin-binding motif 63 80 IPR000048 GO:0005515
Aip03g00038 123 Pfam IQ calmodulin-binding motif 84 101 IPR000048 GO:0005515
Aip03g00038 123 ProSiteProfiles IQ motif profile. 84 109 IPR000048 GO:0005515
Aip03g00038 123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 102 IPR027417 -
Aip03g00038 123 SMART iq_5 83 103 IPR000048 GO:0005515
Aip03g00038 123 SMART iq_5 59 81 IPR000048 GO:0005515
Aip03g00038 123 PANTHER IQ-DOMAIN 5-RELATED 6 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00038 Aip-Chr3 366133 368900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00038 32 109 IQD Protein Family AT3G51380 48.718 3.45e-21 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00038 - - ccaj:109793784 103.219