Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00019 ATGGAAAACATTTGTTCAGAGGTTGAGATGGATTTGCCACCAGGATTCAGGTTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTTTACAACAAGGTCATTGACACTAACTTTTCAGCCAGAGCCATTGCTGAGGTGGACTTGAATAGGTCTGAGCCTTGGGATTTGCCATGGAAGGCGAAAATGGGTGAAAAAGAATGGTACTTTTTCTGTGTAAGGGACAGAAAGTACCCAACAGGATTGAGGACAAACAGAGCAACAGAAGCAGGGTATTGGAAGGCCACTGGAAAAGACAAGGAGATATACAGAGGCAAATCACTTGTTGGCATGAAGAAGACCCTTGTCTTCTACAAAGGTAGGGCTCCCAAAGGTGAGAAATCTGATTGGGTCATGCATGAGTTCAGGCTTCATGGTAAATTCAATCCCCACAACCTCCCCAAATCTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGTCTTCAGCCGCCAAGAAAATCCATCTTACCGGGATAATGAGGTTGGACTCTTCTGTTTTCTTGCCACCATTGGCAGATTCCTCATCATCACCTTCCAACACTGCTACTACAGCACCTTACGTGCCCTGCTTCTCCAATCCAATCATTCACAACCAAGTTGGGATCTTTGATCCATTTAGCAACACCCCTTTTGGTGCTGATTCATTCTACACTTCTCAAGGGATGCCAATGCAACATGCTCAACCACCAAGTTGCTACACCACTCAGGACCATTCAATTCTCAGAACCTTGCTTCAAAACAATTCTTCAAACCTCAGGAGTGGTTTCAAGCCTGCAGAGAGGGAAATGGCCCATCATCAAACTTCTCTTGTTGATGCCAACAACAACAACAACAACAATGGAATCACTTCTGTTGTTGCCCCACAGGACCTTTCTAGCCTCTGGAATTACCAGGTTCAGATCAAGTAG 954 0.4486 MENICSEVEMDLPPGFRFHPTDEELISHYLYNKVIDTNFSARAIAEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSDWVMHEFRLHGKFNPHNLPKSAKNEWVICRVFQKSSAAKKIHLTGIMRLDSSVFLPPLADSSSSPSNTATTAPYVPCFSNPIIHNQVGIFDPFSNTPFGADSFYTSQGMPMQHAQPPSCYTTQDHSILRTLLQNNSSNLRSGFKPAEREMAHHQTSLVDANNNNNNNGITSVVAPQDLSSLWNYQVQIK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00019 317 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
Aip03g00019 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 307 - -
Aip03g00019 317 Gene3D NAC domain 21 167 IPR036093 GO:0003677|GO:0006355
Aip03g00019 317 ProSiteProfiles NAC domain profile. 12 162 IPR003441 GO:0003677|GO:0006355
Aip03g00019 317 SUPERFAMILY NAC domain 8 162 IPR036093 GO:0003677|GO:0006355
Aip03g00019 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00019 Aip-Chr3 197350 198901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00019 10 312 NAC Transcription Factor Family AT5G07680 53.086 1.89e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip03g00019 NAM 5.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00019 - - gmx:100798002 410.223