Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00013 ATGGTTGATTTTGTGTTGGTGGGATTTCTGTCCCTGCTGCTGGGATGTTGTTGTCCTGTTTATGGTGTTGGCGAAGGAGGTTGGAGCAATGCCCATGCAACCTTCTACGGCGGGGGTGATGCTGCTGACACAATGGGTGGAGCGTGTGGATATGGGAACCTGAACAGCGAAGGGTACGGGAGAAACACAGCAGCTGTGAGCAGTGCCCTCTTCAACGGAGGCCTGAGCTGCGGAGCATGCTTCCAGATCAAGTGCGTCAATGACAAGAGCTGGTGTCTGCCGAGGTCGGTGGTGGTCACGGCCACCAATTTCTGCCCTCCAAACCACGCCCTCCCTAGCACCGCCGGCGGATGGTGCAACCCTCCCCTCCACCACTTCGATCTGGCTCAGCCTGTCTTCCAACAGATTGCCAATGTCAGAGCTGGCATAGTCCCTGTTGCCTACACAAGGGTACCATGCCAAAAGAGAGGAGGCATGAGGTTCACCATCAACGGCCATGCATACTTCAACTTAGTACTAATCGGAAACGTTGGAGGTGCAGGCGATGTGCATGCCGTTTCAATCAAAGGCTCCAAAACCAATTGGCAATCCATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACTCATACCTCAACGGCCAAACCCTCTCCTTCAAGGTTACCACCAGTGATGGCCGCACCTTGATCTCTAACAATGTTGCCCCTCCTTCCTGGAGCTCGTACTCGAAGGAAAGAAGACACCTGTGTTTCTGTGGAGAGGCAGTAACCGTTCGCCATTCCTCAGCCGTTTCTGACCATGGTAGGAGGTATGTTACTTGTGGGAAGATACCAAAATGCAACTTTTTTGAGTGGATTGATGATTTTGATTGGATTGAGGTTGATGACGGTGCAAAGAATGGGTGGCCAAAGGAAAAAGAAAGGCGGGTTCACTGTTTGTGTGGTGACACTCTGAGTCTTCAAATTTTAGGAACAACAAAGAATCCTAATAGAAGATTTATTTCTTACCCTAACAGAAGATGCAAATTTTTTGAGTGGGTTGATGAAGTTGGTGCAAGAAGTAACATGTCTATTGCTGCTGTTGGAGTTGTTGGAACACAAAATTCTGCTAAGTTGGAAGCTGAAATATGGAAATTGGATGCATAA 1146 0.4939 MVDFVLVGFLSLLLGCCCPVYGVGEGGWSNAHATFYGGGDAADTMGGACGYGNLNSEGYGRNTAAVSSALFNGGLSCGACFQIKCVNDKSWCLPRSVVVTATNFCPPNHALPSTAGGWCNPPLHHFDLAQPVFQQIANVRAGIVPVAYTRVPCQKRGGMRFTINGHAYFNLVLIGNVGGAGDVHAVSIKGSKTNWQSMSRNWGQNWQSNSYLNGQTLSFKVTTSDGRTLISNNVAPPSWSSYSKERRHLCFCGEAVTVRHSSAVSDHGRRYVTCGKIPKCNFFEWIDDFDWIEVDDGAKNGWPKEKERRVHCLCGDTLSLQILGTTKNPNRRFISYPNRRCKFFEWVDEVGARSNMSIAAVGVVGTQNSAKLEAEIWKLDA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00013 381 Gene3D - 158 244 IPR036749 -
Aip03g00013 381 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 240 IPR007117 -
Aip03g00013 381 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Aip03g00013 381 SUPERFAMILY PHL pollen allergen 155 240 IPR036749 -
Aip03g00013 381 Gene3D - 21 154 IPR036908 -
Aip03g00013 381 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Aip03g00013 381 PANTHER EXPANSIN 6 240 - -
Aip03g00013 381 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Aip03g00013 381 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Aip03g00013 381 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Aip03g00013 381 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Aip03g00013 381 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Aip03g00013 381 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Aip03g00013 381 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Aip03g00013 381 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Aip03g00013 381 PANTHER EXPANSIN-A15 6 240 IPR002963 GO:0009664
Aip03g00013 381 Pfam Lytic transglycolase 63 148 IPR009009 -
Aip03g00013 381 SMART dpbb_1 63 148 IPR007112 -
Aip03g00013 381 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Aip03g00013 381 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Aip03g00013 381 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Aip03g00013 381 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Aip03g00013 381 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Aip03g00013 381 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Aip03g00013 381 Pfam Expansin C-terminal domain 159 236 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00013 Aip-Chr3 141116 145838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00013 7 240 Expansin Gene Family AT2G03090 71.849 1.20e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00013 - K20628 oeu:111398900 392.504