Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00011 ATGGCGACTGTAACAACGCAGGCTTCAGCGACTCTATTGAGGCCATGCCCTTCTTCCAAGGCAAGGTTCCTGTCTGGCTCATCTGGCAGACTCAACAGGGAGGTGTCGTTTAGGCCATTGAGATCTCCTTCTTTCAAGGTGGAAGCCAAGAAAGGAGAGTGGTTGCCTGGCTTGGCCTCTCCAGCTTATCTGAATGGCAGTCTTCCGGGAGACAATGGATTCGACCCGTTGGGGCTAGCAGAGGACCCAGAGAACCTGAAGTGGTTCGTACAGGCAGAGCTGGTGAACGGGAGGTGGGCGATGCTGGGGGTGGCAGGGATGCTGCTGCCGGAGGTGTTCACGAGCATAGGGATCATAAATGTTCCGAAATGGTACGACGCAGGGAAGGAGGAGTACTTCGCGTCTTCGTCGACCCTGTTTGTGATAGAGTTCATACTCTTCCATTACGTTGAGATCAGGAGATGGCAGGACATCAAGAACCCTGGGAGTGTGAACCAAGACCCCATCTTCAAGCAGTACAGCCTCCCCCCCAACGAGGTCGGCTACCCTGGTGGCATCTTCAACCCCCTCAACTTCGCCCCCACTCTTGAGGCCAAGGAGAAGGAGCTTGCCAATGGCCGCTTGGCTATGCTCGCCTTCTTGGGTTTTATTGTTCAGCACAACGTCACTGGCAAAGGCCCCTTTGACAACCTCTTGCAGCACATCTCTGACCCTTGGCACAATACCATTGTTCAAACCCTCTCTTCCAACTAA 753 0.5418 MATVTTQASATLLRPCPSSKARFLSGSSGRLNREVSFRPLRSPSFKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTLSSN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00011 250 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 248 IPR001344 GO:0009765|GO:0016020
Aip03g00011 250 SUPERFAMILY Chlorophyll a-b binding protein 51 248 - -
Aip03g00011 250 Pfam Chlorophyll A-B binding protein 61 220 IPR022796 -
Aip03g00011 250 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 248 - -
Aip03g00011 250 Gene3D Chlorophyll a/b binding protein domain 61 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00011 Aip-Chr3 125543 126378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00011 54 248 Chloroplast and Mitochondria Gene Families AT3G61470 54.726 1.02e-74 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00011 K08910 - rcu:8263414 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00011 03 125543 126378 Aip03g00011 03 125543 126378 ECH