Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00004 ATGAAGAAGAGACAGGTGGCGGTGAAGACTTCGTCAACGGTGATAAGGAACGTAAGGTACGGGGAGTGCCAGAAGAATCACGCGGCCAATATCGGAGGGTACGCGGTGGATGGGTGCAGGGAGTTCATGGCCAGTGCAGGGGAAGGAACCAGCGGCGCTCTCACGTGTGCTGCTTGTGGCTGCCACCGCAACTTCCACCGTAGGGAAGTGCAAACTGAGGTTGTCTtgggacgcttgccccacatcaatatacttgaaaccgtccctCGCGGCCATGACCGAAGAGGGGGAGTGAGACACCGACGGGAGCTAGTTGATGACACAGCGACAGCCGTGAGATGCTCGACTGTGATGATGGCTGCCGGCGATGAAGAGAGATGCGTTGGTGAGGATGCTGGCGACGGCGCTGCAACGTGA 417 0.5324 MKKRQVAVKTSSTVIRNVRYGECQKNHAANIGGYAVDGCREFMASAGEGTSGALTCAACGCHRNFHRREVQTEVVLGRLPHINILETVPRGHDRRGGVRHRRELVDDTATAVRCSTVMMAAGDEERCVGEDAGDGAAT 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00004 138 Pfam ZF-HD protein dimerisation region 17 70 IPR006456 -
Aip03g00004 138 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Aip03g00004 138 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Aip03g00004 138 PANTHER MINI ZINC FINGER PROTEIN 3 2 76 - -
Aip03g00004 138 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00004 Aip-Chr3 65292 67502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00004 1 80 Zinc finger-homeobox gene family AT1G18835 68.605 1.76e-33 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip03g00004 ZF-HD_dimer 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00004 - - tcc:18604683 140.969