Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03388 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAGAACACCGAAGATGAGATCCTGAAAGCAGCTGTTATGAAATATGGCAAGAACCAATGGGCTCGAATCTCTTCCCTTTTGGTTCGTAAATCTGCTAAGCAATGCAAGGCTCGCTGGTACGAATGGCTCGATCCTTCCATCAAGAAGACTGAGTGGACTAGAGAAGAGGATGAGAAGCTGCTTCATCTTGCTAAGCTTATGCCCACGCAGTGGAGAACAATTGCTCCTATTGTAGGACGTACTCCTTCTCAGTGTCTTGAGCGCTACGAGAAGCTCCTTGACGCAGCATGTGTTAAGGATGAGAACTATGAACCCGGCGATGATCCTCGGAAGTTGCGTCCTGGGGAGATTGATCCAAATCCAGAGTCAAAACCTGCACGCCCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCCGAAGCACGAGCTCGGTTAGCGAACACAAAAGGAAAGAAGGCGAAAAGGAAAGCAAGGGAGAAACAGCTTGAGGAAGCCAGAAGACTTGCTTCTTTACAGAAGAAGAGAGAATTGAAGGCTGCGGGAATTGATGTCAGGCATCGAAGGAGAAAAAGGAAAGGCATTGACTATAATGCAGAAATCCCTTTTGAGAAAAGGCCTCCTCCTGGTTTTTTTGACATTGCTGATGAAGACAGACCCGTGGAACAGCCCCAGTTCCCTACTACAATAGAAGAACTTGAGGGTAAAAGAAGGATTGATGTTGAGACACAGTTAAGAAAGCAAGACATTGCAAAAAATAAAATTGCACAGAGGCAAGATGCCCCATCTGCTATACTACATGCCAATAAGTTGAATGATCCGGAAACAGTACGGAAACAAACCAAACTGATGCTTCCGCCCCCCCAGATTTCTGACCAGGAACTGGATGAAATTGCAAGGATGGGTTATGCCAATGACCTAGCTGGGAGTGATGAATTTGGAGAAGGTAGTGCTGCAACACGTGCTCTTCTAGCGAATTATGCACAAACACCTGGCCGGGGAATGACTCCTTTACGAATCCCTCAGCGATCACCGGCTAGTAAAGGAGACGCTGTCATGATGGAAGCTGAAAACCTGGCGAGGTTGAGGGAGTCCCAGACACCATTATTAGGGGGAGAAAACCCAGAGTTGCATCCTTCGGATTTTACTGGGGTTACTCCCAAGAGAAAAGAGGTTCAGACCCCAAATCCAATGTTGACTCCCTCTGCAACTCCTGGAGTTGCAGGTCTCACTCCCAGAATTGGCATGACACCTGCAAGAGATGGTTACGCTAGCATGACACCTAAGGGAACTCCTCTCAGGGATGAGCTTCATATTAATGAGGATGTGGATATGCATGAGCGCGCTAAACTTGAGCTACAAAGAGCTGAAATAAGACGAAGTCTGCGCTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATTGTCATGCAGCCCATTCCAGAAGACGCTGAAGAACCTGAGGAGAAGATTGAAGAGGATATGTCAGATAGAATAGCTAGAGAAATGGCAGAAGAAGAGGCAAGGCAACAGGCGTTACTTAGGAAACGATCAAAAGTCCTTCAAAGGGAGCTTCCTCGGCCTCCAGCTGCATCGTTGGAGCTTATAAGAAATTCTTTGATCAGAGCTGATGGGGACAAGAGTTCCTTTGTTCCACCAACCTCAATTGAGCAAGCTGATGAGATGATAAGAAGGGAGCTTCTTGCTTTGCTGGAGCATGACAATGCTAAGTATCCGCTTGATGAGAAAGTAAATAAGGAGAAAAAGAAAGGAGCTAAGCGTGTGGTAAATGAGCCTGTTGTTCCTGTTATAGAAGAATTTCATGAAGAGGAGATGAAAGATGCTGATAAGTTGATAAAGGATGAGGCCCATTATCTTCGGGTAGCACTGGGACATGAAAGTGAACCCCTTGAGGAATTCATTGAAGCACACAGGACTGGCCTGAATGATCTCATGTTCTTTCCAACCCGTAATGCCTATGGTCTCTCAAGTGTTGCTGGAAACATGGAAAAGCTGGCAGCTTTGCAGAACGAGTTTGAGAATGTGAGGAAAAAGTTCGACGATGGCAAGGAGAAAGTTGTAAAGCTCGAGAAGAAGGCAATACTCCTCACTCAAGGCTATGAGATGAGAGCCAAAAACAGTCTTTGGCCACAAATTGAGGCCACTTCCAAGCAAATGGACATAGCTGCAACCGAATTAGAATGCTTTGAAGCTTTGCAAAAGCAGGAGAAGTTAGCAGCATCCCACAGGATAAACAATCTATGGGAGGAAGTACAGAAGCAAAAGGAACTTGAGAGAACTTTGCAATACAAGTATGGGAATCTTATGGAAGAAGTGGAAAGGATACAAAATGTCATGGAACAGTACAGGGTACAAGCACAAAAGCAAGAAGAAATCGAAGCAAACAATCGTGCTCACGAGTCAACAGAGACTGTTGCTGACAAAACTGGTGCACAGGATTCAGAGAGTTTTAAAGCTGCCCCTCTCACCGAAGAAAATGAAACTGCTATAGCAACTGCTCTGTCTCATGATGAAAGTGAAGCGGGCACTGTGCAAGACCAGACTACCGCTAGCCAGAAAAATGACGTGGATGTGGATTCTGATGATATAAAGCAAACAGAAGACCCTAATGCAATACCGCCAGATGCTGCACTTGCTGCCAAGGATGACGCTGGAAAAGTGGAAGGTACCATCACTGATGGTCACATTGATAACTGTAAGGCAGCATTAGACTAG 2781 0.4563 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDVRHRRRKRKGIDYNAEIPFEKRPPPGFFDIADEDRPVEQPQFPTTIEELEGKRRIDVETQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKQTKLMLPPPQISDQELDEIARMGYANDLAGSDEFGEGSAATRALLANYAQTPGRGMTPLRIPQRSPASKGDAVMMEAENLARLRESQTPLLGGENPELHPSDFTGVTPKRKEVQTPNPMLTPSATPGVAGLTPRIGMTPARDGYASMTPKGTPLRDELHINEDVDMHERAKLELQRAEIRRSLRSGLGSLPQPKNEYQIVMQPIPEDAEEPEEKIEEDMSDRIAREMAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLIRADGDKSSFVPPTSIEQADEMIRRELLALLEHDNAKYPLDEKVNKEKKKGAKRVVNEPVVPVIEEFHEEEMKDADKLIKDEAHYLRVALGHESEPLEEFIEAHRTGLNDLMFFPTRNAYGLSSVAGNMEKLAALQNEFENVRKKFDDGKEKVVKLEKKAILLTQGYEMRAKNSLWPQIEATSKQMDIAATELECFEALQKQEKLAASHRINNLWEEVQKQKELERTLQYKYGNLMEEVERIQNVMEQYRVQAQKQEEIEANNRAHESTETVADKTGAQDSESFKAAPLTEENETAIATALSHDESEAGTVQDQTTASQKNDVDVDSDDIKQTEDPNAIPPDAALAAKDDAGKVEGTITDGHIDNCKAALD 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03388 926 MobiDBLite consensus disorder prediction 399 413 - -
Aip02g03388 926 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Aip02g03388 926 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 844 - -
Aip02g03388 926 MobiDBLite consensus disorder prediction 858 876 - -
Aip02g03388 926 Coils Coil 787 814 - -
Aip02g03388 926 Coils Coil 167 187 - -
Aip02g03388 926 MobiDBLite consensus disorder prediction 113 160 - -
Aip02g03388 926 SMART sant 6 55 IPR001005 -
Aip02g03388 926 SMART sant 58 105 IPR001005 -
Aip02g03388 926 Pfam pre-mRNA splicing factor component 406 652 IPR021786 -
Aip02g03388 926 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Aip02g03388 926 PANTHER - 1 844 - -
Aip02g03388 926 Coils Coil 680 714 - -
Aip02g03388 926 Gene3D - 5 59 - -
Aip02g03388 926 CDD SANT 10 53 IPR001005 -
Aip02g03388 926 MobiDBLite consensus disorder prediction 814 828 - -
Aip02g03388 926 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Aip02g03388 926 CDD SANT_CDC5_II 55 106 - -
Aip02g03388 926 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Aip02g03388 926 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Aip02g03388 926 MobiDBLite consensus disorder prediction 113 177 - -
Aip02g03388 926 MobiDBLite consensus disorder prediction 858 898 - -
Aip02g03388 926 Gene3D - 60 114 - -
Aip02g03388 926 MobiDBLite consensus disorder prediction 814 845 - -
Aip02g03388 926 MobiDBLite consensus disorder prediction 380 423 - -
Aip02g03388 926 Pfam Myb-like DNA-binding domain 10 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03388 Aip-Chr2 110500099 110507559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03388 1 823 MYB-Related Transcription Factor Family AT1G09770 75.633 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g03388 Myb_Cef 1.8e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03388 K12860 - gmx:100790369 1449.49