Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03371 ATGCCTAAGAAGAGGAAAATGCCTAAGAAGAGGGTGAAATGGAAGGAAGAAGAAGTAGACGCCCTCATTCGAGGCGTCAAGAAATATAAAGAAGGCGATTGGGTTGGTATTTTAAATGATCCAGAATTCGCACACCACCTGGCTTTACGTAACAACCAACAACTCAAGGATAAATGGCGGAATATCAAGAACCATGTTCCAAGTGATGCAGGAAGTTCCGAGCCCGCCGAGGAGGGGAATAAGAAAATTGAAGAAGGAGATGCCCAAGAAAAGCAGAGCCTTGTCTCTGAACTAGAGGCAGCTCAGAAGAAGTGCAATGATATGGCTCAGCGCAATGCGGATTCGTATCCCATCAAAAAGTTCCGCCTCACTTGCAAAAGTTTTAGCGTGGATCCCATCTCAACATCGCTTAATGCCGTCATTGGCCCCCGTCTTCAGGAACTATATCTCAGCCTTACAGTAAATGTGATGTTTAGAATGAACTTGCCTAAAGCCATATTCACTTGTACATCACTGACGTCCCTTGTCTTGAAACATGATATTTCATTGTATTATGGTCCGGAGTTTCCAGATGTATATCTGCCATCCCTCAAGAACCTAGAGTTGCAAATTGACGAAGTGGACAACAAGCTTTTTTCTGGCTGCCCTGTTCTTGAAAATCTTAAGCTCATTCTACAGTACTTGAGCCCAGTCTGCCCAAAAGGTTATGTTTATATACCTACAATTCAGATGCCTCAGACATTGAAGAGTTTAACCTTTGAAGATTACTCTACCATGTGTGATGAGATGAACCATCGTGTGATAGACACACCATCTCTTGAATACCTCCATCTGAAAATAGTGACGTCGGTGTTTTCTGAGCTACACATGTCGGTTAGCCATTTTCCCAAGATGGTGGAGGCACATGTTGATATTCAGGAAGATCAGTCACGTGTTGATATTAATGATGCATTTGTTGAACATGTCTGCTGGGTGCCCATGCTTCTCCAGGCACTTCGTGAAACAGAGTTGTTGACATTGAAACGTTACACAACTATGTGCTTATTTGGTGCTCCAGCTTTTGAGTTTCCAGAATTTCACTATTTGATCTATCTAGAGCTTGATTTTCAATTTTTCAACACAAACTTCCTGCTAAACTTCCTTCACAGCTGTCATGTACTTGAAGCTCTCGTAATTTATAATTGGGAGGAACCCTATCTCCTCCCCATGGACTATAATGGACCAACACCACCAACCATGGTTCCCAATTGTGTGACATCACATCTCAAGAATTTTGAGTTTATAGAATATCAAGACGCTGCAGATGAGCATGAATTTATTGCATATCTTTTACAAGGAGGACTTGTTTTGGAGACAGTTAACATTCAATTTAAATCCAAGTTAGACCTAGAGACAAAGTACAATATTGTCCAGGGTTTATCTGCTATACCGAGGGGCTCTACAATATACATCCCTGATCACCTACTAATATACGATAGGCCAGATCAAAACCTTACATAA 1500 0.4153 MPKKRKMPKKRVKWKEEEVDALIRGVKKYKEGDWVGILNDPEFAHHLALRNNQQLKDKWRNIKNHVPSDAGSSEPAEEGNKKIEEGDAQEKQSLVSELEAAQKKCNDMAQRNADSYPIKKFRLTCKSFSVDPISTSLNAVIGPRLQELYLSLTVNVMFRMNLPKAIFTCTSLTSLVLKHDISLYYGPEFPDVYLPSLKNLELQIDEVDNKLFSGCPVLENLKLILQYLSPVCPKGYVYIPTIQMPQTLKSLTFEDYSTMCDEMNHRVIDTPSLEYLHLKIVTSVFSELHMSVSHFPKMVEAHVDIQEDQSRVDINDAFVEHVCWVPMLLQALRETELLTLKRYTTMCLFGAPAFEFPEFHYLIYLELDFQFFNTNFLLNFLHSCHVLEALVIYNWEEPYLLPMDYNGPTPPTMVPNCVTSHLKNFEFIEYQDAADEHEFIAYLLQGGLVLETVNIQFKSKLDLETKYNIVQGLSAIPRGSTIYIPDHLLIYDRPDQNLT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03371 499 ProSiteProfiles Myb-like domain profile. 6 63 IPR001005 -
Aip02g03371 499 SUPERFAMILY Homeodomain-like 7 65 IPR009057 -
Aip02g03371 499 SUPERFAMILY RNI-like 123 395 - -
Aip02g03371 499 CDD SANT_TRF 12 64 - -
Aip02g03371 499 SMART 9598neu4hmm 416 491 IPR006566 -
Aip02g03371 499 Gene3D Ribonuclease Inhibitor 122 400 IPR032675 -
Aip02g03371 499 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 111 480 - -
Aip02g03371 499 Pfam FBD 412 455 IPR006566 -
Aip02g03371 499 Pfam Myb-like DNA-binding domain 14 70 - -
Aip02g03371 499 Coils Coil 91 111 - -
Aip02g03371 499 MobiDBLite consensus disorder prediction 64 96 - -
Aip02g03371 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 67 IPR017930 -
Aip02g03371 499 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 111 480 - -
Aip02g03371 499 SMART sant 10 65 IPR001005 -
Aip02g03371 499 Gene3D - 3 65 - -
Aip02g03371 499 MobiDBLite consensus disorder prediction 75 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03371 Aip-Chr2 110340613 110343435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03371 7 87 Single Myb Histone (SMH) Gene Family AT1G72740 44.444 1.49e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03371 - - aip:110269341 964.911