LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g03371	ATGCCTAAGAAGAGGAAAATGCCTAAGAAGAGGGTGAAATGGAAGGAAGAAGAAGTAGACGCCCTCATTCGAGGCGTCAAGAAATATAAAGAAGGCGATTGGGTTGGTATTTTAAATGATCCAGAATTCGCACACCACCTGGCTTTACGTAACAACCAACAACTCAAGGATAAATGGCGGAATATCAAGAACCATGTTCCAAGTGATGCAGGAAGTTCCGAGCCCGCCGAGGAGGGGAATAAGAAAATTGAAGAAGGAGATGCCCAAGAAAAGCAGAGCCTTGTCTCTGAACTAGAGGCAGCTCAGAAGAAGTGCAATGATATGGCTCAGCGCAATGCGGATTCGTATCCCATCAAAAAGTTCCGCCTCACTTGCAAAAGTTTTAGCGTGGATCCCATCTCAACATCGCTTAATGCCGTCATTGGCCCCCGTCTTCAGGAACTATATCTCAGCCTTACAGTAAATGTGATGTTTAGAATGAACTTGCCTAAAGCCATATTCACTTGTACATCACTGACGTCCCTTGTCTTGAAACATGATATTTCATTGTATTATGGTCCGGAGTTTCCAGATGTATATCTGCCATCCCTCAAGAACCTAGAGTTGCAAATTGACGAAGTGGACAACAAGCTTTTTTCTGGCTGCCCTGTTCTTGAAAATCTTAAGCTCATTCTACAGTACTTGAGCCCAGTCTGCCCAAAAGGTTATGTTTATATACCTACAATTCAGATGCCTCAGACATTGAAGAGTTTAACCTTTGAAGATTACTCTACCATGTGTGATGAGATGAACCATCGTGTGATAGACACACCATCTCTTGAATACCTCCATCTGAAAATAGTGACGTCGGTGTTTTCTGAGCTACACATGTCGGTTAGCCATTTTCCCAAGATGGTGGAGGCACATGTTGATATTCAGGAAGATCAGTCACGTGTTGATATTAATGATGCATTTGTTGAACATGTCTGCTGGGTGCCCATGCTTCTCCAGGCACTTCGTGAAACAGAGTTGTTGACATTGAAACGTTACACAACTATGTGCTTATTTGGTGCTCCAGCTTTTGAGTTTCCAGAATTTCACTATTTGATCTATCTAGAGCTTGATTTTCAATTTTTCAACACAAACTTCCTGCTAAACTTCCTTCACAGCTGTCATGTACTTGAAGCTCTCGTAATTTATAATTGGGAGGAACCCTATCTCCTCCCCATGGACTATAATGGACCAACACCACCAACCATGGTTCCCAATTGTGTGACATCACATCTCAAGAATTTTGAGTTTATAGAATATCAAGACGCTGCAGATGAGCATGAATTTATTGCATATCTTTTACAAGGAGGACTTGTTTTGGAGACAGTTAACATTCAATTTAAATCCAAGTTAGACCTAGAGACAAAGTACAATATTGTCCAGGGTTTATCTGCTATACCGAGGGGCTCTACAATATACATCCCTGATCACCTACTAATATACGATAGGCCAGATCAAAACCTTACATAA	1500	0.4153	MPKKRKMPKKRVKWKEEEVDALIRGVKKYKEGDWVGILNDPEFAHHLALRNNQQLKDKWRNIKNHVPSDAGSSEPAEEGNKKIEEGDAQEKQSLVSELEAAQKKCNDMAQRNADSYPIKKFRLTCKSFSVDPISTSLNAVIGPRLQELYLSLTVNVMFRMNLPKAIFTCTSLTSLVLKHDISLYYGPEFPDVYLPSLKNLELQIDEVDNKLFSGCPVLENLKLILQYLSPVCPKGYVYIPTIQMPQTLKSLTFEDYSTMCDEMNHRVIDTPSLEYLHLKIVTSVFSELHMSVSHFPKMVEAHVDIQEDQSRVDINDAFVEHVCWVPMLLQALRETELLTLKRYTTMCLFGAPAFEFPEFHYLIYLELDFQFFNTNFLLNFLHSCHVLEALVIYNWEEPYLLPMDYNGPTPPTMVPNCVTSHLKNFEFIEYQDAADEHEFIAYLLQGGLVLETVNIQFKSKLDLETKYNIVQGLSAIPRGSTIYIPDHLLIYDRPDQNLT	499

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g03371	499	ProSiteProfiles	Myb-like domain profile.	6	63	IPR001005	-
	Aip02g03371	499	SUPERFAMILY	Homeodomain-like	7	65	IPR009057	-
	Aip02g03371	499	SUPERFAMILY	RNI-like	123	395	-	-
	Aip02g03371	499	CDD	SANT_TRF	12	64	-	-
	Aip02g03371	499	SMART	9598neu4hmm	416	491	IPR006566	-
	Aip02g03371	499	Gene3D	Ribonuclease Inhibitor	122	400	IPR032675	-
	Aip02g03371	499	PANTHER	F-BOX/RNI SUPERFAMILY PROTEIN-RELATED	111	480	-	-
	Aip02g03371	499	Pfam	FBD	412	455	IPR006566	-
	Aip02g03371	499	Pfam	Myb-like DNA-binding domain	14	70	-	-
	Aip02g03371	499	Coils	Coil	91	111	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g03371	Aip-Chr2	110340613	110343435	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g03371	7	87	Single Myb Histone (SMH) Gene Family	AT1G72740	44.444	1.49e-12	66.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g03371	-		-	aip:110269341	964.911

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