Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03364 ATGATGAACCCTAACCCTAATAATAAAGGGAGTGAAGAAGGAGGAGTAATCCAGAAGAAAAAGAGAAATCATCCAGGAACACCAGACCCGGAAGCGGAGGTAATAGCGCTGTCGCCCAAGACGCTGATGGCCACAAACAGGTTCATATGCGAGATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTGCACAGGAGGGGACACAACCTGCCATGGAAGCTGAGGCAGAGGTCCAACAAGGAGCCCGTGAGGAAGAAGGCACACAGCAAGACCTGCGGCACTCGCGAGTACAAATGTGATTGCGGCACCCTCTTCTCCAGGAAGGATAGCTTCATCACCCACAGAGCTTTCTGCGATGCTTTGGCTCTCGAGACCTCCTCCCTTCTCCTTCCCCCCTCCACCACAAATCTAAATTTCCACACCCAACAACCACCTCCTCCTCCTCCTCCTCCTCACAATCGTGCTTTCTCTCATGCCCTCATTCCTACTCCTCTTCATTTCAATCACTCACCTAACTTATCCCTATGGCTCAACCATCATCAACAACACGGCACTTCCTCTCATGATAATAATAATAATAATAATAATAATAGTAATCTTGTCGGACTCTATCATCACAATGCGTCTTCTTCCTTGGCTTTACCTGACATTGTGCAAATGAATAACTTCATCCACAATAGTAATAGTGCAAACCACCTTTCACTCTCTTCATCGTCACTACCTGCTATTGGAAAAAGACCAGAAATAGGAGCTTCATCATCATCAGATAACTTGGCTTCTATTTATACTTCTGACGGTCAAAGCACCACCACCGATAACAATAACAAGCAATTATCTCCCATGTCAGCAACCGCACTTCTTCAGAAAGCAGCTCAGATGGGTTCCACAAGATCAACCACCAGTCCTTCCATTTTCAGTGCTACTTTTGGGGTAATGACCTCCTCATCATCTAATAATTCAAACCATGCTCATGCTGGGGATTTTGCTTCAACTAGTAGCTTCAGCTCATTCACGCATTCTTCCAACACTTATGATCAGCTAGTTATGCAAAGTGCAGCACAAAATAGTACCACTGATCCTGCGGGGAACTTGAAGCTCCCTCATCATGGCGGTTCAAACTCAGCGTCCATGGAACATAACTTGACGAGAGATTTTCTCGGGGTCAGCGGTGCTGGTGAAGGACCCGCTGGCCTTCATCAGTTCCTACCACAAGAGCTTGCAAAGTTTGCTTCTTCCATGGGGCTCACCCAATTCACTACCAATTAG 1272 0.467 MMNPNPNNKGSEEGGVIQKKKRNHPGTPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEPVRKKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALALETSSLLLPPSTTNLNFHTQQPPPPPPPPHNRAFSHALIPTPLHFNHSPNLSLWLNHHQQHGTSSHDNNNNNNNNSNLVGLYHHNASSSLALPDIVQMNNFIHNSNSANHLSLSSSSLPAIGKRPEIGASSSSDNLASIYTSDGQSTTTDNNNKQLSPMSATALLQKAAQMGSTRSTTSPSIFSATFGVMTSSSSNNSNHAHAGDFASTSSFSSFTHSSNTYDQLVMQSAAQNSTTDPAGNLKLPHHGGSNSASMEHNLTRDFLGVSGAGEGPAGLHQFLPQELAKFASSMGLTQFTTN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03364 423 MobiDBLite consensus disorder prediction 355 377 - -
Aip02g03364 423 PANTHER ZINC FINGER PROTEIN JACKDAW 3 88 IPR033243 GO:0003700
Aip02g03364 423 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Aip02g03364 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 70 IPR013087 -
Aip02g03364 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 88 - -
Aip02g03364 423 MobiDBLite consensus disorder prediction 248 280 - -
Aip02g03364 423 MobiDBLite consensus disorder prediction 182 203 - -
Aip02g03364 423 PANTHER ZINC FINGER PROTEIN JACKDAW 88 416 IPR033243 GO:0003700
Aip02g03364 423 Pfam Zinc-finger double-stranded RNA-binding 48 70 IPR022755 -
Aip02g03364 423 MobiDBLite consensus disorder prediction 1 31 - -
Aip02g03364 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 88 416 - -
Aip02g03364 423 MobiDBLite consensus disorder prediction 252 280 - -
Aip02g03364 423 Gene3D Classic Zinc Finger 32 121 - -
Aip02g03364 423 MobiDBLite consensus disorder prediction 14 28 - -
Aip02g03364 423 SUPERFAMILY beta-beta-alpha zinc fingers 47 117 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03364 Aip-Chr2 110294766 110296118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03364 17 324 IDZ Gene Family AT5G66730 40.310 7.60e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g03364 zf-C2H2_jaz 6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03364 K25870 - adu:107463670 705.286