Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03352 ATGATAACGTTTATGGAGTCAAAGGAGAAAACAAGAGAAGCAGTGGAGAAGTGTCTGGACCCTCAGCTATGGCATGCCTGTGCAGGTGGCATGGTGCAGATGCCACAGGTGAACACAAAGGTCTATTACTTCCCTCAGGGCCATGCTGAGCATGCATGTGGTCCTGTGAACTTTAGGACCTGCCCCAAAGTGGTTCCACCTATGGTTCCATGCAGGGTTGGTGCTGTGAAGTACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAGCTTAGGCTTCTTCCTGTCAGTGGCAATGATGCTGATTATGGAAATGATGCTGGTGTTGTTGGAGGAGGTGGAATCCATGAACCTGAGGCTCAGGATAAGCCTGCTTCATTTGCAAAGACCTTGACTCAATCCGATGCCAACAACGGTGGGGGGTTTTCGGTTCCTAGGTATTGTGCCGAGACCATTTTCCCGCGGCTGGACTACTCGGCCGACCCTCCGGTACAGAGCATACTTGCAAAAGATGTTCACGGCGAGACGTGGAAGTTTAGGCACATTTATAGGGGCACGCCGAGGCGGCACCTCCTAACTACCGGTTGGAGTACTTTTGTGAATCACAAGAAGCTTGTGGCTGGGGACTCAATTGTGTTTTTGAGGGCGGACAATGGGGAACTGTGTGTTGGGATTCGGCGAGCAAAGAAGGGTCTGGGAGGCGGGCCTGAGGCTTCTTCAGGTTGGAATCCGGCGGGTGGAAATTGTCCAATGCCTTATGGTGGATTTCCAGGGTTTCTGAAGGAGGATGATATGAGGCTCTTGAGAAATGGATTGGACACTGGCACGAGAATGATGGGGAAGGGAAAAGTGCGGCCTGAAGCAGTCATTGAAGCTGCTACTCTTGCTGCCAACAAGCAACCTTTTGAGGTCGTTTACTACCCTCGCGCGAGTACGCCCGAGTTCTGTGTGAAGGCCTCACTGGTTGAAGCTGCACTGCAGATTAGGTGGTGCTCTGGAATAAGGTTCAAGATGGCCTTTGAAACCGAGGACTCGTCGCGAATTAGCTGGTTTATGGGTACCATATCTTCAGTTCAGGTTGCTGATCCCCTTGGATGGCCTAACTCACCTTGGAGGCTTCTTCAGGTTACATGGGACGAACCAGATTTACTTCAAAATGTGAGAAGAGTGAGTCCATGGCTTGTTGAATTAGTATCAAACATGCCTGCCCTTCATCTTTCGCCTTTCTCACCACCGCGGAAGAAATTAAGATTGCCCCAACACCCGGATTTTCCCCTTGATGGCCAAATTCATGTGCCAACATTTTCCAGCAACCTTCTAGGTCCGAGTAACCCCTATGGTTGTCTACCCGAAACTACTCCTGCTGGCATGCAGGGAGCCAGGCATGGTCATTATGGTATATCCTTATCAGATCTCCACCTCAGTAAACTGCAGTCAGGTCTATATTCGGCTGGTTTCCCGTCTCTTGATCACGCTGCTACACCAATCAGGGTCCCCAATAACTTACTATTGCAAAAACCCAGCACCAGTGAAAGTGTCTCTTGCTTGTTATCTATGGCGAGTTCTGTCCAATCCTCAAAGAAACCAGATGAAGGGAAGACACCACAGCTTGTGCTTTTTGGCCAAAAGATTCTCACGGAGCAGCAGCTCTCTCTCAGCAGCTCTGGTGATGCTGTCTCCCCTGTTCTTACCGGAAATAGTTCATCTGATGGAAATGCTGATAAACTCAATAATTTTTCTGATGGTTCTGGTTCTGCTCTGCATCACCAAGGCCTACCAGAACGCTCCTCTTGTGAGAGGTTCCCGTGGTATAGGGATCACCGTCAAGAAACCGAGGCCGGTTTGGAGACCGGTCACTGCAAAGTTTTTATGGAATCGGAAGATGTAGGTCGGACATTGGACCTCTCGTTGCTTGCTTCGTACGATGAACTGCACAGAAAGCTAGCAGACATGTTTGGCATCGAAAAATCCGAGATGCTAAGTCATGTGCTCTACCGAGACATAAATGGTGCAGTCAAACACCTTGGAGATGAACCATTCAGTGATTTCTCAAGAACAACAAAGAGATTGACTATTCTAATGGATTCCAGCAGTGACAATGTAGGAGTGTAG 2112 0.492 MITFMESKEKTREAVEKCLDPQLWHACAGGMVQMPQVNTKVYYFPQGHAEHACGPVNFRTCPKVVPPMVPCRVGAVKYMADPETDEVYAKLRLLPVSGNDADYGNDAGVVGGGGIHEPEAQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQSILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGELCVGIRRAKKGLGGGPEASSGWNPAGGNCPMPYGGFPGFLKEDDMRLLRNGLDTGTRMMGKGKVRPEAVIEAATLAANKQPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLGWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPALHLSPFSPPRKKLRLPQHPDFPLDGQIHVPTFSSNLLGPSNPYGCLPETTPAGMQGARHGHYGISLSDLHLSKLQSGLYSAGFPSLDHAATPIRVPNNLLLQKPSTSESVSCLLSMASSVQSSKKPDEGKTPQLVLFGQKILTEQQLSLSSSGDAVSPVLTGNSSSDGNADKLNNFSDGSGSALHHQGLPERSSCERFPWYRDHRQETEAGLETGHCKVFMESEDVGRTLDLSLLASYDELHRKLADMFGIEKSEMLSHVLYRDINGAVKHLGDEPFSDFSRTTKRLTILMDSSSDNVGV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03352 703 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Aip02g03352 703 MobiDBLite consensus disorder prediction 555 593 - -
Aip02g03352 703 SUPERFAMILY DNA-binding pseudobarrel domain 121 228 IPR015300 -
Aip02g03352 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 694 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip02g03352 703 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Aip02g03352 703 MobiDBLite consensus disorder prediction 555 585 - -
Aip02g03352 703 Pfam Auxin response factor 292 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip02g03352 703 Gene3D - 615 701 - -
Aip02g03352 703 Gene3D - 329 403 - -
Aip02g03352 703 CDD B3_DNA 126 227 IPR003340 GO:0003677
Aip02g03352 703 ProSiteProfiles PB1 domain profile. 617 700 IPR000270 GO:0005515
Aip02g03352 703 PANTHER AUXIN RESPONSE FACTOR 7 694 - -
Aip02g03352 703 SMART B3_2 127 229 IPR003340 GO:0003677
Aip02g03352 703 Gene3D - 125 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03352 Aip-Chr2 110221954 110224324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03352 14 703 B3 DNA Binding Superfamily AT4G30080 57.468 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip02g03352 B3 1.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03352 - - gmx:100796522 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03352 02 110221954 110224324 Aip09g03070 09 135376995 135379027 ECH
Aip02g03352 02 110221954 110224324 Aip02g03352 02 110221954 110224324 ECH
Aip02g03352 02 110221954 110224324 Aip08g00525 08 4276109 4280096 ECH
Aip02g03352 02 110221954 110224324 Aip03g00341 03 3320657 3323868 ECH