Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip02g03346 | ATGTCTACCTCTGCAGCTTCTCTTGCTCTTCCAACCCTATCACTTCGAACCCGACAACCCCTCTCTTCTTCTCCTCCACAATGCTTCGCTTCTTTTTCCTTCAACCCCGCCAAATCCGCTTCCATTTCCACCACTTTCCTTCCTCTTCGTCCAATCAGGTTCGTTTCAAATGTCGCTCTTTCCTCCCAATTCGACCAGGACGAGGAGATTCTCAGCGATGGAGATGACCGCAGCTTCTCCCCTGACCTCAAGCTCTTCGTTGGCAACCTTCCTTTCAGTGTTGACAGCGCCCAACTCGCTGAGCTCTTTGAAAGTGCTGGTACCGTTGAAGTCGTTGAGGTGATTTATGATAAGATGAGTGGAAGAAGCAGGGGCTTTGGTTTTGTGACCATGTCTTCGATTGAGGAAGCTGAAGCTGCTAAACAACAATTCGATGGCTATGAGCTAGATGGGAGGGCACTGAGAGTGAATTCTGGACCACCTCCTGCTAAGAATGAGGGTTCCCGTTTCAGATCTCCTTCTAGGGGTGGTTTCTCTTCAGACAATGGAAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTCGACCACTTAGCACTTGAGAACTTGTTTCGTGAACAAGGAAAAGTTTTGGAGGCCAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTCGGATTTGTGACTTACAGCAGCCCTGAAGAGGTCAACAGTGCTATTGAATCCCTAGATGGCGCGGACTTGAATGGCAGAGCTATTAGAGTTTCTTTAGCAGATTCTAAGCCAAAGCGCCCGTTTTGA | 807 | 0.4833 | MSTSAASLALPTLSLRTRQPLSSSPPQCFASFSFNPAKSASISTTFLPLRPIRFVSNVALSSQFDQDEEILSDGDDRSFSPDLKLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKMSGRSRGFGFVTMSSIEEAEAAKQQFDGYELDGRALRVNSGPPPAKNEGSRFRSPSRGGFSSDNGNRVHVGNLAWGVDHLALENLFREQGKVLEAKVIYDRESGRSRGFGFVTYSSPEEVNSAIESLDGADLNGRAIRVSLADSKPKRPF | 268 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip02g03346 | 268 | PANTHER | 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC | 1 | 268 | - | - | |
Aip02g03346 | 268 | Gene3D | - | 58 | 181 | IPR012677 | - | |
Aip02g03346 | 268 | Gene3D | - | 182 | 267 | IPR012677 | - | |
Aip02g03346 | 268 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 184 | 262 | IPR000504 | GO:0003723 | |
Aip02g03346 | 268 | PANTHER | OS02G0815200 PROTEIN | 1 | 268 | - | - | |
Aip02g03346 | 268 | SUPERFAMILY | RNA-binding domain, RBD | 79 | 182 | IPR035979 | GO:0003676 | |
Aip02g03346 | 268 | SMART | rrm1_1 | 84 | 157 | IPR000504 | GO:0003723 | |
Aip02g03346 | 268 | SMART | rrm1_1 | 185 | 258 | IPR000504 | GO:0003723 | |
Aip02g03346 | 268 | CDD | RRM_HP0827_like | 84 | 157 | - | - | |
Aip02g03346 | 268 | MobiDBLite | consensus disorder prediction | 157 | 181 | - | - | |
Aip02g03346 | 268 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 85 | 155 | IPR000504 | GO:0003723 | |
Aip02g03346 | 268 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 256 | IPR000504 | GO:0003723 | |
Aip02g03346 | 268 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 83 | 161 | IPR000504 | GO:0003723 | |
Aip02g03346 | 268 | SUPERFAMILY | RNA-binding domain, RBD | 179 | 266 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip02g03346 | Aip-Chr2 | 110128499 | 110130860 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip02g03346 | 85 | 266 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.486 | 2.85e-13 | 67.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip02g03346 | - | - | gmx:100786275 | 360.533 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip02g03346 | 02 | 110128499 | 110130860 | Aip02g03346 | 02 | 110128499 | 110130860 | ECH |