Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03346 ATGTCTACCTCTGCAGCTTCTCTTGCTCTTCCAACCCTATCACTTCGAACCCGACAACCCCTCTCTTCTTCTCCTCCACAATGCTTCGCTTCTTTTTCCTTCAACCCCGCCAAATCCGCTTCCATTTCCACCACTTTCCTTCCTCTTCGTCCAATCAGGTTCGTTTCAAATGTCGCTCTTTCCTCCCAATTCGACCAGGACGAGGAGATTCTCAGCGATGGAGATGACCGCAGCTTCTCCCCTGACCTCAAGCTCTTCGTTGGCAACCTTCCTTTCAGTGTTGACAGCGCCCAACTCGCTGAGCTCTTTGAAAGTGCTGGTACCGTTGAAGTCGTTGAGGTGATTTATGATAAGATGAGTGGAAGAAGCAGGGGCTTTGGTTTTGTGACCATGTCTTCGATTGAGGAAGCTGAAGCTGCTAAACAACAATTCGATGGCTATGAGCTAGATGGGAGGGCACTGAGAGTGAATTCTGGACCACCTCCTGCTAAGAATGAGGGTTCCCGTTTCAGATCTCCTTCTAGGGGTGGTTTCTCTTCAGACAATGGAAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTCGACCACTTAGCACTTGAGAACTTGTTTCGTGAACAAGGAAAAGTTTTGGAGGCCAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTCGGATTTGTGACTTACAGCAGCCCTGAAGAGGTCAACAGTGCTATTGAATCCCTAGATGGCGCGGACTTGAATGGCAGAGCTATTAGAGTTTCTTTAGCAGATTCTAAGCCAAAGCGCCCGTTTTGA 807 0.4833 MSTSAASLALPTLSLRTRQPLSSSPPQCFASFSFNPAKSASISTTFLPLRPIRFVSNVALSSQFDQDEEILSDGDDRSFSPDLKLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKMSGRSRGFGFVTMSSIEEAEAAKQQFDGYELDGRALRVNSGPPPAKNEGSRFRSPSRGGFSSDNGNRVHVGNLAWGVDHLALENLFREQGKVLEAKVIYDRESGRSRGFGFVTYSSPEEVNSAIESLDGADLNGRAIRVSLADSKPKRPF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03346 268 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 268 - -
Aip02g03346 268 Gene3D - 58 181 IPR012677 -
Aip02g03346 268 Gene3D - 182 267 IPR012677 -
Aip02g03346 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
Aip02g03346 268 PANTHER OS02G0815200 PROTEIN 1 268 - -
Aip02g03346 268 SUPERFAMILY RNA-binding domain, RBD 79 182 IPR035979 GO:0003676
Aip02g03346 268 SMART rrm1_1 84 157 IPR000504 GO:0003723
Aip02g03346 268 SMART rrm1_1 185 258 IPR000504 GO:0003723
Aip02g03346 268 CDD RRM_HP0827_like 84 157 - -
Aip02g03346 268 MobiDBLite consensus disorder prediction 157 181 - -
Aip02g03346 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
Aip02g03346 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Aip02g03346 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Aip02g03346 268 SUPERFAMILY RNA-binding domain, RBD 179 266 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03346 Aip-Chr2 110128499 110130860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g03346 85 266 Eukaryotic Initiation Factors Gene Family AT4G34110 26.486 2.85e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03346 - - gmx:100786275 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03346 02 110128499 110130860 Aip02g03346 02 110128499 110130860 ECH